Philip Bertemes
YOU?
Author Swipe
View article: The ultrastructure of the apical organ of Curini‐Galletti's larva, a new polyclad larval type
The ultrastructure of the apical organ of Curini‐Galletti's larva, a new polyclad larval type Open
Polycladida are the only free‐living flatworms with a planktonic larval stage in some species. Currently, it is not clear if a larval stage is ancestral in polyclads, and which type of larva that would be. Known polyclad larvae are Müller'…
View article: A new species of Cycloporus from the Adriatic Sea, with an updated phylogeny of the families Euryleptidae and Stylostomidae (Polycladida, Platyhelminthes)
A new species of Cycloporus from the Adriatic Sea, with an updated phylogeny of the families Euryleptidae and Stylostomidae (Polycladida, Platyhelminthes) Open
We describe Cycloporus pinkipus sp. n., a new polyclad flatworm species from the Adriatic coast of Croatia using live images, histological sections, and a molecular marker. It is the fifteenth described species of Cycloporus Lang, 1884 and…
View article: A chromosome-scale epigenetic map of the <i>Hydra</i> genome reveals conserved regulators of cell state
A chromosome-scale epigenetic map of the <i>Hydra</i> genome reveals conserved regulators of cell state Open
The epithelial and interstitial stem cells of the freshwater polyp Hydra are the best-characterized stem cell systems in any cnidarian, providing valuable insight into cell type evolution and the origin of stemness in animals. However, lit…
View article: Do Not Lose Your Head over the Unequal Regeneration Capacity in Prolecithophoran Flatworms
Do Not Lose Your Head over the Unequal Regeneration Capacity in Prolecithophoran Flatworms Open
One of the central questions in studying the evolution of regeneration in flatworms remains whether the ancestral flatworm was able to regenerate all body parts, including the head. If so, this ability was subsequently lost in most existen…
View article: Supplementary figures for manuscript submission to MDPI Biology
Supplementary figures for manuscript submission to MDPI Biology Open
Supplementary figures for manuscript submission to MDPI Biology.
View article: Supplementary figures for manuscript submission to MDPI Biology
Supplementary figures for manuscript submission to MDPI Biology Open
Supplementary figures for manuscript submission to MDPI Biology.
View article: Supplementary figures for manuscript submission to MDPI Biology
Supplementary figures for manuscript submission to MDPI Biology Open
Supplementary figures for manuscript submission to MDPI Biology.
View article: In the footsteps of sea stars: deciphering the catalogue of proteins involved in underwater temporary adhesion
In the footsteps of sea stars: deciphering the catalogue of proteins involved in underwater temporary adhesion Open
Sea stars adhere strongly but temporarily to underwater substrata via the secretion of a blend of proteins, forming an adhesive footprint that they leave on the surface after detachment. Their tube feet enclose a duo-gland adhesive system …
View article: New <i>Hydra</i> genomes reveal conserved principles of hydrozoan transcriptional regulation
New <i>Hydra</i> genomes reveal conserved principles of hydrozoan transcriptional regulation Open
The epithelial and interstitial stem cells of the freshwater polyp Hydra are the best characterized stem cell systems in any cnidarian, providing valuable insight into cell type evolution and the origin of stemness in animals. However, lit…
View article: Sticking Together an Updated Model for Temporary Adhesion
Sticking Together an Updated Model for Temporary Adhesion Open
Non-parasitic flatworms are known to temporarily attach to the substrate by secreting a multicomponent bioadhesive to counteract water movements. However, to date, only species of two higher-level flatworm taxa (Macrostomorpha and Proseria…
View article: Sticking together an updated model for temporary adhesion
Sticking together an updated model for temporary adhesion Open
This zenodo dataset contains raw sequencing data (Illumina total RNA-seq, Illumina differential RNA-seq, Illumina genomic DNA, Nanopore high molecular weight genomic DNA) of the polyclad flatworm Theama mediterranea. This data was…
View article: Sticking together an updated model for temporary adhesion
Sticking together an updated model for temporary adhesion Open
This zenodo dataset contains raw sequencing data (Illumina total RNA-seq, Illumina differential RNA-seq, Illumina genomic DNA, Nanopore high molecular weight genomic DNA) of the polyclad flatworm Theama mediterranea. This data was…
View article: Primers and Sanger sequencing results from In the footsteps of sea stars: deciphering the catalogue of proteins involved in underwater temporary adhesion
Primers and Sanger sequencing results from In the footsteps of sea stars: deciphering the catalogue of proteins involved in underwater temporary adhesion Open
Original A. rubens transcriptome sequences, primers used to elongate the Sea star footprint proteins (Sfps) sequences and Sanger sequencing results.
View article: Primers used for in situ hybridization probes from In the footsteps of sea stars: deciphering the catalogue of proteins involved in underwater temporary adhesion
Primers used for in situ hybridization probes from In the footsteps of sea stars: deciphering the catalogue of proteins involved in underwater temporary adhesion Open
Sea star footprint proteins (Sfps) of A. rubens: expression pattern, DNA and protein sequences and primers used for in situ probe synthesis.
View article: Protein aminoacid composition and predicted posttranslational modifications from In the footsteps of sea stars: deciphering the catalogue of proteins involved in underwater temporary adhesion
Protein aminoacid composition and predicted posttranslational modifications from In the footsteps of sea stars: deciphering the catalogue of proteins involved in underwater temporary adhesion Open
Amino acid composition and predicted posttranslational modifications of Sea star footprint proteins (Sfps).
View article: (Un)expected Similarity of the Temporary Adhesive Systems of Marine, Brackish, and Freshwater Flatworms
(Un)expected Similarity of the Temporary Adhesive Systems of Marine, Brackish, and Freshwater Flatworms Open
Many free-living flatworms have evolved a temporary adhesion system, which allows them to quickly attach to and release from diverse substrates. In the marine Macrostomum lignano, the morphology of the adhesive system and the adhesion-rela…
View article: (Un)expected similarity of the temporary adhesive systems of marine, brackish, and freshwater flatworms
(Un)expected similarity of the temporary adhesive systems of marine, brackish, and freshwater flatworms Open
This repository contains a container with 441 single *.tiff files from a serial-block-face-imaging experiment of a Macrostomum lignano tail plate. The images were aligned with Dragonfly v. 2021.1 (ORS). This dataset was used to reconstruct…
View article: (Un)expected similarity of the temporary adhesive systems of marine, brackish, and freshwater flatworms
(Un)expected similarity of the temporary adhesive systems of marine, brackish, and freshwater flatworms Open
This repository contains a container with 441 single *.tiff files from a serial-block-face-imaging experiment of a Macrostomum lignano tail plate. The images were aligned with Dragonfly v. 2021.1 (ORS). This dataset was used to reconstruct…
View article: Omics‐based molecular analyses of adhesion by aquatic invertebrates
Omics‐based molecular analyses of adhesion by aquatic invertebrates Open
Many aquatic invertebrates are associated with surfaces, using adhesives to attach to the substratum for locomotion, prey capture, reproduction, building or defence. Their intriguing and sophisticated biological glues have been the focus o…
View article: The serotonergic nervous system of prolecithophorans shows a closer similarity to fecampiids than to triclads (Platyhelminthes)
The serotonergic nervous system of prolecithophorans shows a closer similarity to fecampiids than to triclads (Platyhelminthes) Open
Prolecithophora is a poorly studied flatworm order belonging to the adiaphanidan clade, together with Tricladida and Fecampiida. The phylogenetic position of the three orders within this clade is not yet resolved. Additionally, no obvious …
View article: Author response for "The serotonergic nervous system of prolecithophorans shows a closer similarity to fecampiids than to triclads (Platyhelminthes)"
Author response for "The serotonergic nervous system of prolecithophorans shows a closer similarity to fecampiids than to triclads (Platyhelminthes)" Open
View article: Regeneration of the flatworm Prosthiostomum siphunculus (Polycladida, Platyhelminthes)
Regeneration of the flatworm Prosthiostomum siphunculus (Polycladida, Platyhelminthes) Open
Fueled by the discovery of head regeneration in triclads (planarians) two and a half centuries ago, flatworms have been the focus of regeneration research. But not all flatworms can regenerate equally well and to obtain a better picture of…
View article: RNA-Seq of three free-living flatworm species suggests rapid evolution of reproduction-related genes
RNA-Seq of three free-living flatworm species suggests rapid evolution of reproduction-related genes Open
Background The genus Macrostomum consists of small free-living flatworms and contains Macrostomum lignano , which has been used in investigations of ageing, stem cell biology, bioadhesion, karyology, and sexual selection in hermaphrodites.…
View article: Additional file 2 of RNA-Seq of three free-living flatworm species suggests rapid evolution of reproduction-related genes
Additional file 2 of RNA-Seq of three free-living flatworm species suggests rapid evolution of reproduction-related genes Open
Additional file 2. Maximum likelihood phylogeny. Phylogeny inferred using IQ-TREE. See Additional file 1 and 3 for the amino acid alignment used to infer this phylogeny and for the IQ-TREE logfile, respectively.
View article: Additional file 1 of RNA-Seq of three free-living flatworm species suggests rapid evolution of reproduction-related genes
Additional file 1 of RNA-Seq of three free-living flatworm species suggests rapid evolution of reproduction-related genes Open
Additional file 1. Amino acid alignment of one-to-one orthologs. Amino acid alignment used for the phylogenetic analysis. See Additional file 2 and 3 for the inferred phylogeny and for the IQ-TREE logfile, respectively.
View article: Additional file 7 of RNA-Seq of three free-living flatworm species suggests rapid evolution of reproduction-related genes
Additional file 7 of RNA-Seq of three free-living flatworm species suggests rapid evolution of reproduction-related genes Open
Additional file 7: Table S4. DE results comparing regenerants versus hatchlings (RvH).
View article: Additional file 4 of RNA-Seq of three free-living flatworm species suggests rapid evolution of reproduction-related genes
Additional file 4 of RNA-Seq of three free-living flatworm species suggests rapid evolution of reproduction-related genes Open
Additional file 4: Table S1. Orthogroups (OG) inferred by Orthofinder.
View article: Additional file 15 of RNA-Seq of three free-living flatworm species suggests rapid evolution of reproduction-related genes
Additional file 15 of RNA-Seq of three free-living flatworm species suggests rapid evolution of reproduction-related genes Open
Additional file 15: Table S9. Results of DE reanalysis of the social dataset OvI contrast.
View article: Additional file 10 of RNA-Seq of three free-living flatworm species suggests rapid evolution of reproduction-related genes
Additional file 10 of RNA-Seq of three free-living flatworm species suggests rapid evolution of reproduction-related genes Open
Additional file 10: Table S6. Annotation of the Mlig_37v3 transcriptome. Annotations for each gene are given. Annotation sources include the positional, neoblast, and social dataset.
View article: Additional file 14 of RNA-Seq of three free-living flatworm species suggests rapid evolution of reproduction-related genes
Additional file 14 of RNA-Seq of three free-living flatworm species suggests rapid evolution of reproduction-related genes Open
Additional file 14: Table S8. Results of DE reanalysis of the positional dataset.