Dylan Pilz
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View article: andersen-lab/Freyja: 2.0.2
andersen-lab/Freyja: 2.0.2 Open
adds covar for accelerated freyja covariants analyses adds barcode versioning for non-SARS-CoV-2 pathogens (which are in the freyja-barcodes repo) standardizes nomenclature schemes for barcodes and lineageyml for non-SC2 pathogens
View article: Real-time, multi-pathogen wastewater genomic surveillance with Freyja 2
Real-time, multi-pathogen wastewater genomic surveillance with Freyja 2 Open
Case-based infectious disease surveillance is fundamental to public health, but is resource-intensive, logistically complex, and prone to sampling bias. Wastewater testing and sequencing have increasingly been used for population-scale mon…
View article: Wastewater-integrated pathogen surveillance dashboards enable real-time, transparent, and interpretable public health risk assessment and dissemination
Wastewater-integrated pathogen surveillance dashboards enable real-time, transparent, and interpretable public health risk assessment and dissemination Open
Timely pathogen surveillance and reporting is essential for effective public health guidance. Web dashboards have become a key tool for communicating public health information to stakeholders, health care workers, and the broader community…
View article: Community utilization of a co-created COVID-19 testing program in a US/Mexico border community
Community utilization of a co-created COVID-19 testing program in a US/Mexico border community Open