David D. Fang
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View article: The brown fiber phenotype in cotton line SA-40 is linked to a missing Ty3-like retrotransposon upstream of the GhTT2_A07
The brown fiber phenotype in cotton line SA-40 is linked to a missing Ty3-like retrotransposon upstream of the GhTT2_A07 Open
Introduction The naturally brown colored fibers of some cottons exist in varying shades of brown. Linkage analyses have revealed up to six individual loci ( Lc1–Lc6 ) for brown color and suggested a separate genetic basis for each color va…
View article: From cotton gin byproduct to nano-in-nano structured hybrid composite for effective pathogen control
From cotton gin byproduct to nano-in-nano structured hybrid composite for effective pathogen control Open
Cotton gin byproduct (CGB), a high-volume byproduct of cotton processing composed of discarded plant materials, is often underutilized despite its abundance and potential value. In this study, CGB was upcycled into a nano-in-nano structure…
View article: Establishment of an RAA-CRISPR/Cas12a-based diagnostic method for the detection of fowl adenovirus serotype 4 virus in chickens and wild birds
Establishment of an RAA-CRISPR/Cas12a-based diagnostic method for the detection of fowl adenovirus serotype 4 virus in chickens and wild birds Open
Fowl adenovirus (FAdV) serotype 4, recognized as the causative agent of hydropericardium syndrome (HPS) in chickens, causes substantial economic losses in poultry farming. To develop a simple, rapid, and reliable diagnostic method for the …
View article: Impact of Carbon and Nitrogen Assimilation in <i>Sargassum fusiforme</i> (Harvey) Setchell due to Marine Heatwave Under Global Warming
Impact of Carbon and Nitrogen Assimilation in <i>Sargassum fusiforme</i> (Harvey) Setchell due to Marine Heatwave Under Global Warming Open
Because of the rising global temperatures, Sargassum fusiforme (Harvey) Setchell, a commercially valuable seaweed, has experienced reduced yield and quality due to high temperatures from marine heatwave events. However, the mechanisms unde…
View article: Genome-wide association studies of bundle and single fiber length traits reveal the genetic basis of within-sample variation in upland cotton fiber length
Genome-wide association studies of bundle and single fiber length traits reveal the genetic basis of within-sample variation in upland cotton fiber length Open
Within-sample variation in cotton fiber length is a major factor influencing the production and quality of yarns. The textile industry has been searching for approaches of improving the long fiber fraction and minimizing the short fiber fr…
View article: Repurposing Cotton Gin Trash for Cellulose Nanofibril–Silver Hybrid and Ultralight Silver-Infused Aerogel
Repurposing Cotton Gin Trash for Cellulose Nanofibril–Silver Hybrid and Ultralight Silver-Infused Aerogel Open
Cellulose nanofibril-silver (CNF-Ag) hybrid and ultralight silver-infused aerogel were produced using cotton gin trash (CGT), an abundant agro-waste material. This repurposing of CGT was achieved by exploiting its potential for CNF extract…
View article: Assessment of Segal method for identifying crystallinity evolution in developing cotton fibers
Assessment of Segal method for identifying crystallinity evolution in developing cotton fibers Open
The crystallinity index (CI) is an important parameter in evaluating cotton fiber quality. Due to its ease and speed in measuring CIs from X‐ray diffraction (XRD) patterns, the Segal method is popularly used. In this study, we assessed the…
View article: Raman spectroscopic assessment of fibers and seeds of six cotton genotypes
Raman spectroscopic assessment of fibers and seeds of six cotton genotypes Open
Raman spectroscopy (RS) is a vibrational spectroscopy. This work reported the RS spectral characteristics of fiber and seed of six cotton ( Gossypium sp.) genotypes differing in fiber length. While the RS spectra of fiber samples were domi…
View article: Flame resistant cotton lines generated by synergistic epistasis in a MAGIC population
Flame resistant cotton lines generated by synergistic epistasis in a MAGIC population Open
Textiles made from cotton fibers are flammable and thus often include flame retardant additives for consumer safety. Transgressive segregation in multi-parent populations facilitates new combinations of alleles of genes and can result in t…
View article: A deletion/duplication in the<i>Ligon lintless-2</i>locus induces siRNAs that inhibit cotton fiber cell elongation
A deletion/duplication in the<i>Ligon lintless-2</i>locus induces siRNAs that inhibit cotton fiber cell elongation Open
Most cultivated cotton (Gossypium hirsutum L.) varieties have two types of seed fibers: short fuzz fiber strongly adhered to the seed coat, and long lint fiber used in the textile industry. The Ligon lintless-2 (Li2) cotton mutant has a no…
View article: Dynamic 3D genome architecture of cotton fiber reveals subgenome-coordinated chromatin topology for 4-staged single-cell differentiation
Dynamic 3D genome architecture of cotton fiber reveals subgenome-coordinated chromatin topology for 4-staged single-cell differentiation Open
Background Despite remarkable advances in our knowledge of epigenetically mediated transcriptional programming of cell differentiation in plants, little is known about chromatin topology and its functional implications in this process. Res…
View article: A GWAS Identified a Major QTL for Resistance to Fusarium Wilt (Fusarium Oxysporum f. sp. Vasinfectum) Race 4 in a MAGIC Population of Upland Cotton and a Meta-Analysis of QTLs for Fusarium Wilt Resistance
A GWAS Identified a Major QTL for Resistance to Fusarium Wilt (Fusarium Oxysporum f. sp. Vasinfectum) Race 4 in a MAGIC Population of Upland Cotton and a Meta-Analysis of QTLs for Fusarium Wilt Resistance Open
Numerous studies have been conducted to investigate the genetic basis of Fusarium wilt (FW) resistance using bi-parental and association mapping populations in cotton. In this study, a multi-parent advanced generation inter-cross (MAGIC) p…
View article: Additional file 3 of Dynamic 3D genome architecture of cotton fiber reveals subgenome-coordinated chromatin topology for 4-staged single-cell differentiation
Additional file 3 of Dynamic 3D genome architecture of cotton fiber reveals subgenome-coordinated chromatin topology for 4-staged single-cell differentiation Open
Additional file 3: Table S2. Summary of differentially expressed genes in fiber development.
View article: Additional file 4 of Dynamic 3D genome architecture of cotton fiber reveals subgenome-coordinated chromatin topology for 4-staged single-cell differentiation
Additional file 4 of Dynamic 3D genome architecture of cotton fiber reveals subgenome-coordinated chromatin topology for 4-staged single-cell differentiation Open
Additional file 4: Table S3. Summary of homoeologous genes with expression bias in fiber development.
View article: Additional file 13 of Dynamic 3D genome architecture of cotton fiber reveals subgenome-coordinated chromatin topology for 4-staged single-cell differentiation
Additional file 13 of Dynamic 3D genome architecture of cotton fiber reveals subgenome-coordinated chromatin topology for 4-staged single-cell differentiation Open
Additional file 13: Table S12. TAD-like structures that form cliques in fiber development.
View article: Additional file 11 of Dynamic 3D genome architecture of cotton fiber reveals subgenome-coordinated chromatin topology for 4-staged single-cell differentiation
Additional file 11 of Dynamic 3D genome architecture of cotton fiber reveals subgenome-coordinated chromatin topology for 4-staged single-cell differentiation Open
Additional file 11: Table S10. Homoeologous TAD-like structures in fiber development.
View article: Additional file 1 of Dynamic 3D genome architecture of cotton fiber reveals subgenome-coordinated chromatin topology for 4-staged single-cell differentiation
Additional file 1 of Dynamic 3D genome architecture of cotton fiber reveals subgenome-coordinated chromatin topology for 4-staged single-cell differentiation Open
Additional file 1: Table S1. Summary of RNA-seq and ChIP-seq raw data.
View article: Additional file 8 of Dynamic 3D genome architecture of cotton fiber reveals subgenome-coordinated chromatin topology for 4-staged single-cell differentiation
Additional file 8 of Dynamic 3D genome architecture of cotton fiber reveals subgenome-coordinated chromatin topology for 4-staged single-cell differentiation Open
Additional file 8: Table S7. The GO terms enriched by genes contained in the compartment switching regions.
View article: Additional file 7 of Dynamic 3D genome architecture of cotton fiber reveals subgenome-coordinated chromatin topology for 4-staged single-cell differentiation
Additional file 7 of Dynamic 3D genome architecture of cotton fiber reveals subgenome-coordinated chromatin topology for 4-staged single-cell differentiation Open
Additional file 7: Table S6. Genes included in the compartment switching regions.
View article: Additional file 9 of Dynamic 3D genome architecture of cotton fiber reveals subgenome-coordinated chromatin topology for 4-staged single-cell differentiation
Additional file 9 of Dynamic 3D genome architecture of cotton fiber reveals subgenome-coordinated chromatin topology for 4-staged single-cell differentiation Open
Additional file 9: Table S8. TAD-like structure regions during fiber development.
View article: Additional file 6 of Dynamic 3D genome architecture of cotton fiber reveals subgenome-coordinated chromatin topology for 4-staged single-cell differentiation
Additional file 6 of Dynamic 3D genome architecture of cotton fiber reveals subgenome-coordinated chromatin topology for 4-staged single-cell differentiation Open
Additional file 6: Table S5. Summary of Hi-C data in this study.