Raghvendra Mall
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View article: PRESTIGE-ST: Patch Resolution and Encoder STrategies for Inference of Gene Expression from Spatial Transcriptomics
PRESTIGE-ST: Patch Resolution and Encoder STrategies for Inference of Gene Expression from Spatial Transcriptomics Open
View article: EffiChem : Efficient Adaptation of Chemical Language Models for Molecular Property Prediction
EffiChem : Efficient Adaptation of Chemical Language Models for Molecular Property Prediction Open
Chemical language models (CLMs) such as ChemBERTa and Molformer enable compound property prediction, albeit using an over-parameterized model, and the computational demands of full finetuning such models limit their adoption in resource-co…
View article: Ferroptosis-activating metabolite acrolein antagonizes necroptosis and anti-cancer therapeutics
Ferroptosis-activating metabolite acrolein antagonizes necroptosis and anti-cancer therapeutics Open
View article: Evolutionary and Functional Analysis of Caspase-8 and ASC Interactions to Drive Lytic Cell Death, PANoptosis
Evolutionary and Functional Analysis of Caspase-8 and ASC Interactions to Drive Lytic Cell Death, PANoptosis Open
Caspases are evolutionarily conserved proteins essential for driving cell death in development and host defense. Caspase-8, a key member of the caspase family, is implicated in nonlytic apoptosis, as well as lytic forms of cell death. Rece…
View article: Benchmarking protein language models for protein crystallization
Benchmarking protein language models for protein crystallization Open
The problem of protein structure determination is usually solved by X-ray crystallography. Several in silico deep learning methods have been developed to overcome the high attrition rate, cost of experiments and extensive trial-and-error s…
View article: Knowledge and Attitude regarding Antara (DMPA) Scheme among the Reproductive Age Women in Selected Rural Areas of Uttar Pradesh
Knowledge and Attitude regarding Antara (DMPA) Scheme among the Reproductive Age Women in Selected Rural Areas of Uttar Pradesh Open
The Antara scheme (dispensing Depot medroxyprogesterone acetate/ DMPA) was introduced for women in India to increase the space between children in 2017. The study was planned to assess the knowledge and attitude regarding Antara for mother…
View article: EffiChem: Efficient Adaptation of Chemical Language Models for Molecular Property Prediction
EffiChem: Efficient Adaptation of Chemical Language Models for Molecular Property Prediction Open
View article: A patient stratification signature mirrors the immunogenic potential of high grade serous ovarian cancers
A patient stratification signature mirrors the immunogenic potential of high grade serous ovarian cancers Open
Background While high-grade serous ovarian cancer (HGSC) has proven largely resistant to immunotherapy, sporadic incidents of partial and complete response have been observed in clinical trials and case reports. These observations suggest …
View article: A community challenge to predict clinical outcomes after immune checkpoint blockade in non-small cell lung cancer
A community challenge to predict clinical outcomes after immune checkpoint blockade in non-small cell lung cancer Open
View article: Comprehensive Analysis of Serum Metabolites and Whole Blood Cell Transcriptome reveals the Dysregulated Metabolic Pathways in Metabolically Healthy Obesity.
Comprehensive Analysis of Serum Metabolites and Whole Blood Cell Transcriptome reveals the Dysregulated Metabolic Pathways in Metabolically Healthy Obesity. Open
Background Obesity stands as a formidable public health challenge, contributing to a spectrum of diseases, including cardiovascular disorders, and type 2 diabetes mellitus. Individuals with obesity classified as “metabolically healthy” hav…
View article: Benchmarking Protein Language Models for Protein Crystallization
Benchmarking Protein Language Models for Protein Crystallization Open
The problem of protein structure determination is usually solved by X-ray crystallography. Several in silico deep learning methods have been developed to overcome the high attrition rate, cost of experiments and extensive trial-and-error s…
View article: NLRC5 senses NAD+ depletion, forming a PANoptosome and driving PANoptosis and inflammation
NLRC5 senses NAD+ depletion, forming a PANoptosome and driving PANoptosis and inflammation Open
View article: The protein phosphatase PP6 promotes RIPK1-dependent PANoptosis
The protein phosphatase PP6 promotes RIPK1-dependent PANoptosis Open
View article: VISH-Pred: an ensemble of fine-tuned ESM models for protein toxicity prediction
VISH-Pred: an ensemble of fine-tuned ESM models for protein toxicity prediction Open
Peptide- and protein-based therapeutics are becoming a promising treatment regimen for myriad diseases. Toxicity of proteins is the primary hurdle for protein-based therapies. Thus, there is an urgent need for accurate in silico methods fo…
View article: Politics on YouTube: Detecting Online Group Polarization Based on News Videos’ Comments
Politics on YouTube: Detecting Online Group Polarization Based on News Videos’ Comments Open
Technology-mediated group toxicity polarization is a major socio-technological issue of our time. For better large-scale monitoring of polarization among social media news content, we quantify the toxicity of news video comments using a To…
View article: NINJ1 mediates inflammatory cell death, PANoptosis, and lethality during infection conditions and heat stress
NINJ1 mediates inflammatory cell death, PANoptosis, and lethality during infection conditions and heat stress Open
View article: A community challenge to predict clinical outcomes after immune checkpoint blockade in non-small cell lung cancer
A community challenge to predict clinical outcomes after immune checkpoint blockade in non-small cell lung cancer Open
View article: MATE-Pred: Multimodal Attention-based TCR-Epitope interaction Predictor
MATE-Pred: Multimodal Attention-based TCR-Epitope interaction Predictor Open
An accurate binding affinity prediction between T-cell receptors and epitopes contributes decisively to develop successful immunotherapy strategies. Some state-of-the-art computational methods implement deep learning techniques by integrat…
View article: Pancancer network analysis reveals key master regulators for cancer invasiveness
Pancancer network analysis reveals key master regulators for cancer invasiveness Open
View article: Pancancer network analysis reveals key master regulators for cancer invasiveness
Pancancer network analysis reveals key master regulators for cancer invasiveness Open
View article: MATE-Pred: Multimodal Attention-based TCR-Epitope interaction Predictor
MATE-Pred: Multimodal Attention-based TCR-Epitope interaction Predictor Open
An accurate binding affinity prediction between T-cell receptors and epitopes contributes decisively to develop successful immunotherapy strategies. Some state-of-the-art computational methods implement deep learning techniques by integrat…
View article: Comparative analysis identifies genetic and molecular factors associated with prognostic clusters of PANoptosis in glioma, kidney and melanoma cancer
Comparative analysis identifies genetic and molecular factors associated with prognostic clusters of PANoptosis in glioma, kidney and melanoma cancer Open
View article: Inflammatory cell death, PANoptosis, screen identifies host factors in coronavirus innate immune response as therapeutic targets
Inflammatory cell death, PANoptosis, screen identifies host factors in coronavirus innate immune response as therapeutic targets Open
View article: Pancancer network analysis reveals key master regulators for cancer invasiveness
Pancancer network analysis reveals key master regulators for cancer invasiveness Open
Background Tumor invasiveness reflects numerous biological changes, including tumorigenesis, progression, and metastasis. To decipher the role of transcriptional regulators (TR) involved in tumor invasiveness, we performed a systematic net…
View article: NLRP12-PANoptosome activates PANoptosis and pathology in response to heme and PAMPs
NLRP12-PANoptosome activates PANoptosis and pathology in response to heme and PAMPs Open
View article: Whole-genome CRISPR screen identifies RAVER1 as a key regulator of RIPK1-mediated inflammatory cell death, PANoptosis
Whole-genome CRISPR screen identifies RAVER1 as a key regulator of RIPK1-mediated inflammatory cell death, PANoptosis Open
View article: Editorial: Insights in AI: Medicine and public health 2022
Editorial: Insights in AI: Medicine and public health 2022 Open
EDITORIAL article Front. Artif. Intell., 02 May 2023Sec. Medicine and Public Health Volume 6 - 2023 | https://doi.org/10.3389/frai.2023.1166426
View article: An integrated tumor, immune and microbiome atlas of colon cancer
An integrated tumor, immune and microbiome atlas of colon cancer Open
View article: Supplementary Figures from Fasting-Mimicking Diet Is Safe and Reshapes Metabolism and Antitumor Immunity in Patients with Cancer
Supplementary Figures from Fasting-Mimicking Diet Is Safe and Reshapes Metabolism and Antitumor Immunity in Patients with Cancer Open
Supplementary Figures
View article: Supplementary Methods from Fasting-Mimicking Diet Is Safe and Reshapes Metabolism and Antitumor Immunity in Patients with Cancer
Supplementary Methods from Fasting-Mimicking Diet Is Safe and Reshapes Metabolism and Antitumor Immunity in Patients with Cancer Open
Supplementary Methods