Explanipedia

Comprehensive genomic analysis of the CNGC gene family in Brassica oleracea: novel insights into synteny, structures, and transcript profiles Open

Kaleem U. Kakar, Zarqa Nawaz, Khadija Kakar, Essa Ali, Abdulwareth Almoneafy , et al. · 2017

Biology

Our comprehensive genome-wide analysis represents a rich data resource for studying new plant gene families. Our data may also be useful for breeding new B. oleracea cultivars with improved productivity, quality, and stress resistance.

Additional file 15: of Comprehensive genomic analysis of the CNGC gene family in Brassica oleracea: novel insights into synteny, structures, and transcript profiles Open

Kaleem U. Kakar, Zarqa Nawaz, Khadija Kakar, Essa Ali, Abdulwareth Almoneafy , et al. · 2017

Biology

Table showing the details of protein-protein interaction, and available mutant information for Arabidopsis CNGC-encoded proteins. The information was obtained from AtPID. (XLSX 37Â kb)

Additional file 19: of Comprehensive genomic analysis of the CNGC gene family in Brassica oleracea: novel insights into synteny, structures, and transcript profiles Open

Kaleem U. Kakar, Zarqa Nawaz, Khadija Kakar, Essa Ali, Abdulwareth Almoneafy , et al. · 2017

Biology

GO term enrichment analysis at level 2 for category: P: Biological process, F: Molecular function and C: Cellular component. (XLSX 9Â kb)

Additional file 16: of Comprehensive genomic analysis of the CNGC gene family in Brassica oleracea: novel insights into synteny, structures, and transcript profiles Open

Kaleem U. Kakar, Zarqa Nawaz, Khadija Kakar, Essa Ali, Abdulwareth Almoneafy , et al. · 2017

Biology

The potential miRNA targets in the set of 26 BoCNGC transcripts using cut-off threshold of 5 in the search parameters. (XLSX 14Â kb)

Additional file 1: of Comprehensive genomic analysis of the CNGC gene family in Brassica oleracea: novel insights into synteny, structures, and transcript profiles Open

Kaleem U. Kakar, Zarqa Nawaz, Khadija Kakar, Essa Ali, Abdulwareth Almoneafy , et al. · 2017

Biology

List of truncated gene accessions discarded during preliminary investigation. (XLSX 9Â kb)

Additional file 23: of Comprehensive genomic analysis of the CNGC gene family in Brassica oleracea: novel insights into synteny, structures, and transcript profiles Open

Kaleem U. Kakar, Zarqa Nawaz, Khadija Kakar, Essa Ali, Abdulwareth Almoneafy , et al. · 2017

Biology

List of primers used for gene expression via qRT-PCR. (XLSX 12Â kb)

Additional file 20: of Comprehensive genomic analysis of the CNGC gene family in Brassica oleracea: novel insights into synteny, structures, and transcript profiles Open

Kaleem U. Kakar, Zarqa Nawaz, Khadija Kakar, Essa Ali, Abdulwareth Almoneafy , et al. · 2017

Biology

Reference KO pathway associated with BoCNGC genes. The pathway map was obtained from http://www.kegg.jp/kegg/kegg1.html . (XLSX 10Â kb)

Additional file 12: of Comprehensive genomic analysis of the CNGC gene family in Brassica oleracea: novel insights into synteny, structures, and transcript profiles Open

Kaleem U. Kakar, Zarqa Nawaz, Khadija Kakar, Essa Ali, Abdulwareth Almoneafy , et al. · 2017

Biology

Functional annotation of the identified conserved MEME motifs. (XLSX 10Â kb)

Additional file 17: of Comprehensive genomic analysis of the CNGC gene family in Brassica oleracea: novel insights into synteny, structures, and transcript profiles Open

Kaleem U. Kakar, Zarqa Nawaz, Khadija Kakar, Essa Ali, Abdulwareth Almoneafy , et al. · 2017

Biology

GO term enrichment analysis of BoCNGC genes for Molecular function (MF), Biological process (BP) and Cellular component (CC). (XLSX 17Â kb)

Additional file 5: of Comprehensive genomic analysis of the CNGC gene family in Brassica oleracea: novel insights into synteny, structures, and transcript profiles Open

Kaleem U. Kakar, Zarqa Nawaz, Khadija Kakar, Essa Ali, Abdulwareth Almoneafy , et al. · 2017

Biology

Syntenic ancestral block structure between A. thaliana and three sub-genomes of B. oleracea and B. rapa. (XLSX 10Â kb)

Additional file 6: of Comprehensive genomic analysis of the CNGC gene family in Brassica oleracea: novel insights into synteny, structures, and transcript profiles Open

Kaleem U. Kakar, Zarqa Nawaz, Khadija Kakar, Essa Ali, Abdulwareth Almoneafy , et al. · 2017

Biology

Synteny of BoCNGC in other plant species. (XLSX 18Â kb)

Raqeeb Ullah YOU? Author Swipe