Ravi Devani
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View article: The Seed Development Factors TT2 and MYB5 Regulate Heat Stress Response in Arabidopsis
The Seed Development Factors TT2 and MYB5 Regulate Heat Stress Response in Arabidopsis Open
HEAT SHOCK FACTOR A2 (HSFA2) is a regulator of multiple environmental stress responses required for stress acclimation. We analyzed HSFA2 co-regulated genes and identified 43 genes strongly co-regulated with HSFA2 during multiple stresses.…
View article: Evidence for Dosage Compensation in Coccinia grandis, a Plant with a Highly Heteromorphic XY System
Evidence for Dosage Compensation in Coccinia grandis, a Plant with a Highly Heteromorphic XY System Open
About 15,000 angiosperms are dioecious, but the mechanisms of sex determination in plants remain poorly understood. In particular, how Y chromosomes evolve and degenerate, and whether dosage compensation evolves as a response, are matters …
View article: Evidence for dosage compensation in<i>Coccinia grandis</i>, a plant with a highly heteromorphic XY system
Evidence for dosage compensation in<i>Coccinia grandis</i>, a plant with a highly heteromorphic XY system Open
Some ~15.000 angiosperms are dioecious, but mechanisms of sex determination in plants remain poorly understood. In particular, how Y chromosomes evolve and degenerate, and whether dosage compensation evolves as a response, are matters of d…
View article: Additional file 8: of Flower bud proteome reveals modulation of sex-biased proteins potentially associated with sex expression and modification in dioecious Coccinia grandis
Additional file 8: of Flower bud proteome reveals modulation of sex-biased proteins potentially associated with sex expression and modification in dioecious Coccinia grandis Open
Data S5. Overlap of differentially expressed proteins between all the pairwise comparisons at middle stage of flower development. (XLSX 38 kb)
View article: Additional file 9: of Flower bud proteome reveals modulation of sex-biased proteins potentially associated with sex expression and modification in dioecious Coccinia grandis
Additional file 9: of Flower bud proteome reveals modulation of sex-biased proteins potentially associated with sex expression and modification in dioecious Coccinia grandis Open
Data S6. Normalized peak areas for the proteins involved in male and female reproductive organ development, seed development and embryo development along with their respective Arabidopsis accession IDs. (XLSX 144 kb)
View article: Additional file 5: of Flower bud proteome reveals modulation of sex-biased proteins potentially associated with sex expression and modification in dioecious Coccinia grandis
Additional file 5: of Flower bud proteome reveals modulation of sex-biased proteins potentially associated with sex expression and modification in dioecious Coccinia grandis Open
Data S3. Normalized peak areas for each of the quantified proteins across all the samples and pairwise differential expression analysis results with respective fold-changes as well as P-values. DEPs with fold change ≥1.5 and P ≤ 0.05 are s…
View article: Additional file 1: of Flower bud proteome reveals modulation of sex-biased proteins potentially associated with sex expression and modification in dioecious Coccinia grandis
Additional file 1: of Flower bud proteome reveals modulation of sex-biased proteins potentially associated with sex expression and modification in dioecious Coccinia grandis Open
Data S1. Detailed report of protein identification from C. grandis flower buds using Paragon algorithm with ProteinPilot v5.0.1. (XLSX 12245 kb)
View article: Additional file 2: of Flower bud proteome reveals modulation of sex-biased proteins potentially associated with sex expression and modification in dioecious Coccinia grandis
Additional file 2: of Flower bud proteome reveals modulation of sex-biased proteins potentially associated with sex expression and modification in dioecious Coccinia grandis Open
Data S2. BLAST2GO annotation table for the C. grandis flower bud proteins detected in this study. (XLSX 640 kb)
View article: Additional file 7: of Flower bud proteome reveals modulation of sex-biased proteins potentially associated with sex expression and modification in dioecious Coccinia grandis
Additional file 7: of Flower bud proteome reveals modulation of sex-biased proteins potentially associated with sex expression and modification in dioecious Coccinia grandis Open
Data S4. Overlap of differentially expressed proteins between all the pairwise comparisons at early stage of flower development. (XLSX 42 kb)
View article: Genome-wide transcriptome analysis reveals small RNA profiles involved in early stages of stolon-to-tuber transitions in potato under photoperiodic conditions
Genome-wide transcriptome analysis reveals small RNA profiles involved in early stages of stolon-to-tuber transitions in potato under photoperiodic conditions Open
Our study suggests that sRNAs and their selective target genes could be associated with the regulation of early stages of stolon-to-tuber transitions in a photoperiod-dependent manner in potato.
View article: Additional file 7: of Genome-wide transcriptome analysis reveals small RNA profiles involved in early stages of stolon-to-tuber transitions in potato under photoperiodic conditions
Additional file 7: of Genome-wide transcriptome analysis reveals small RNA profiles involved in early stages of stolon-to-tuber transitions in potato under photoperiodic conditions Open
Table S6. B2G annotation for miRNA targets (XLSX 210 kb)
View article: Additional file 8: of Genome-wide transcriptome analysis reveals small RNA profiles involved in early stages of stolon-to-tuber transitions in potato under photoperiodic conditions
Additional file 8: of Genome-wide transcriptome analysis reveals small RNA profiles involved in early stages of stolon-to-tuber transitions in potato under photoperiodic conditions Open
Table S7. TAS loci prediction (XLSX 104 kb)
View article: Additional file 2: of Genome-wide transcriptome analysis reveals small RNA profiles involved in early stages of stolon-to-tuber transitions in potato under photoperiodic conditions
Additional file 2: of Genome-wide transcriptome analysis reveals small RNA profiles involved in early stages of stolon-to-tuber transitions in potato under photoperiodic conditions Open
Table S1. List of primers (XLSX 12 kb)
View article: Additional file 3: of Genome-wide transcriptome analysis reveals small RNA profiles involved in early stages of stolon-to-tuber transitions in potato under photoperiodic conditions
Additional file 3: of Genome-wide transcriptome analysis reveals small RNA profiles involved in early stages of stolon-to-tuber transitions in potato under photoperiodic conditions Open
Table S2. List of conserved and novel miRNAs (XLSX 104 kb)
View article: Additional file 4: of Genome-wide transcriptome analysis reveals small RNA profiles involved in early stages of stolon-to-tuber transitions in potato under photoperiodic conditions
Additional file 4: of Genome-wide transcriptome analysis reveals small RNA profiles involved in early stages of stolon-to-tuber transitions in potato under photoperiodic conditions Open
Table S3. DE analysis- Conserved miRNAs (XLSX 112 kb)
View article: Additional file 5: of Genome-wide transcriptome analysis reveals small RNA profiles involved in early stages of stolon-to-tuber transitions in potato under photoperiodic conditions
Additional file 5: of Genome-wide transcriptome analysis reveals small RNA profiles involved in early stages of stolon-to-tuber transitions in potato under photoperiodic conditions Open
Table S4. DE analysis- Novel miRNAs (XLSX 113 kb)
View article: Additional file 10: of Genome-wide transcriptome analysis reveals small RNA profiles involved in early stages of stolon-to-tuber transitions in potato under photoperiodic conditions
Additional file 10: of Genome-wide transcriptome analysis reveals small RNA profiles involved in early stages of stolon-to-tuber transitions in potato under photoperiodic conditions Open
Table S9. B2G annotation for siRNA targets (XLSX 489 kb)
View article: Additional file 6: of Genome-wide transcriptome analysis reveals small RNA profiles involved in early stages of stolon-to-tuber transitions in potato under photoperiodic conditions
Additional file 6: of Genome-wide transcriptome analysis reveals small RNA profiles involved in early stages of stolon-to-tuber transitions in potato under photoperiodic conditions Open
Table S5. psRNA targets- Conserved and Novel miRNAs (XLSX 217 kb)
View article: Additional file 9: of Genome-wide transcriptome analysis reveals small RNA profiles involved in early stages of stolon-to-tuber transitions in potato under photoperiodic conditions
Additional file 9: of Genome-wide transcriptome analysis reveals small RNA profiles involved in early stages of stolon-to-tuber transitions in potato under photoperiodic conditions Open
Table S8 siRNAs from TAS and target prediction (XLSX 377 kb)
View article: De novo transcriptome assembly from flower buds of dioecious, gynomonoecious and chemically masculinized female Coccinia grandis reveals genes associated with sex expression and modification
De novo transcriptome assembly from flower buds of dioecious, gynomonoecious and chemically masculinized female Coccinia grandis reveals genes associated with sex expression and modification Open
Suppression of ethylene responses in both male and Ag-H compared to female buds suggests a probable role of ethylene in stamen suppression similar to monoecious cucurbits such as melon and cucumber. Also, pollen fertility associated GO ter…
View article: TableS4_AB_nonorm_trinotate_annotation_report.xlsx
TableS4_AB_nonorm_trinotate_annotation_report.xlsx Open
Annotation details for the Coccinia grandis de novo transcriptome.
View article: De novo-assembled Coccinia grandis flower bud transcriptome
De novo-assembled Coccinia grandis flower bud transcriptome Open
De novo transcriptome assembled from flower buds of male, female, gynomonoecious and silver nitrate treated plants of Coccinia grandis.
View article: Additional file 6: Table S4. of De novo transcriptome assembly from flower buds of dioecious, gynomonoecious and chemically masculinized female Coccinia grandis reveals genes associated with sex expression and modification
Additional file 6: Table S4. of De novo transcriptome assembly from flower buds of dioecious, gynomonoecious and chemically masculinized female Coccinia grandis reveals genes associated with sex expression and modification Open
Annotation report for the de novo-assembled C. grandis flower bud transcriptome generated using Trinotate. Available at https://doi.org/10.6084/m9.figshare.5217652.v1 . (XLSX 5870 kb)
View article: Additional file 9: Table S6. of De novo transcriptome assembly from flower buds of dioecious, gynomonoecious and chemically masculinized female Coccinia grandis reveals genes associated with sex expression and modification
Additional file 9: Table S6. of De novo transcriptome assembly from flower buds of dioecious, gynomonoecious and chemically masculinized female Coccinia grandis reveals genes associated with sex expression and modification Open
Gene ontology (GO) enrichment analysis for differentially expressed transcripts in each pairwise comparison. (XLSX 1509 kb)
View article: Additional file 2: of De novo transcriptome assembly from flower buds of dioecious, gynomonoecious and chemically masculinized female Coccinia grandis reveals genes associated with sex expression and modification
Additional file 2: of De novo transcriptome assembly from flower buds of dioecious, gynomonoecious and chemically masculinized female Coccinia grandis reveals genes associated with sex expression and modification Open
De novo-assembled Coccinia grandis floral bud transcriptome. Available at https://doi.org/10.6084/m9.figshare.5220874.v1 . (FASTA 4100 kb)
View article: De novo-assembled Coccinia grandis flower bud transcriptome
De novo-assembled Coccinia grandis flower bud transcriptome Open
De novo transcriptome assembled from flower buds of male, female, gynomonoecious and silver nitrate treated plants of Coccinia grandis.