Rémy-Félix Serre
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View article: Pig and quail CpG methylation datasets from short and long read sequencing technologies
Pig and quail CpG methylation datasets from short and long read sequencing technologies Open
View article: Detection of DNA methylation signatures through the lens of genomic imprinting
Detection of DNA methylation signatures through the lens of genomic imprinting Open
View article: Transgenerational epigenetics in quail: whole genome DNA methylation analysis
Transgenerational epigenetics in quail: whole genome DNA methylation analysis Open
View article: An optimized protocol to detect high-throughput DNA methylation from custom targeted sequences
An optimized protocol to detect high-throughput DNA methylation from custom targeted sequences Open
The protocol describes a targeted methylation library preparation upstream short read sequencing with an Illumina instrument. The protocol includes the New England Biolabs Next Enzymatic Methyl-seq Library Preparation workflow combined wit…
View article: Transgenerational epigenetics in quail
Transgenerational epigenetics in quail Open
View article: SDR enzymes oxidize specific lipidic alkynylcarbinols into cytotoxic protein-reactive species
SDR enzymes oxidize specific lipidic alkynylcarbinols into cytotoxic protein-reactive species Open
Hundreds of cytotoxic natural or synthetic lipidic compounds contain chiral alkynylcarbinol motifs, but the mechanism of action of those potential therapeutic agents remains unknown. Using a genetic screen in haploid human cells, we discov…
View article: Author response: SDR enzymes oxidize specific lipidic alkynylcarbinols into cytotoxic protein-reactive species
Author response: SDR enzymes oxidize specific lipidic alkynylcarbinols into cytotoxic protein-reactive species Open
Article Figures and data Abstract Editor's evaluation Introduction Results Discussion Materials and methods Data availability References Decision letter Author response Article and author information Metrics Abstract Hundreds of cytotoxic …
View article: Transcription-associated topoisomerase 2α (TOP2A) activity is a major effector of cytotoxicity induced by G-quadruplex ligands
Transcription-associated topoisomerase 2α (TOP2A) activity is a major effector of cytotoxicity induced by G-quadruplex ligands Open
G-quadruplexes (G4) are non-canonical DNA structures found in the genome of most species including human. Small molecules stabilizing these structures, called G4 ligands, have been identified and, for some of them, shown to induce cytotoxi…
View article: Population genomics of apricots unravels domestication history and adaptive events
Population genomics of apricots unravels domestication history and adaptive events Open
View article: Author response: Transcription-associated topoisomerase 2α (TOP2A) activity is a major effector of cytotoxicity induced by G-quadruplex ligands
Author response: Transcription-associated topoisomerase 2α (TOP2A) activity is a major effector of cytotoxicity induced by G-quadruplex ligands Open
Article Figures and data Abstract Introduction Results Discussion Materials and methods Data availability References Decision letter Author response Article and author information Metrics Abstract G-quadruplexes (G4) are non-canonical DNA …
View article: Complete Genome Sequences of Four Atrazine-Degrading Bacterial Strains, <i>Pseudomonas</i> sp. Strain ADPe, <i>Arthrobacter</i> sp. Strain TES, <i>Variovorax</i> sp. Strain 38R, and <i>Chelatobacter</i> sp. Strain SR38
Complete Genome Sequences of Four Atrazine-Degrading Bacterial Strains, <i>Pseudomonas</i> sp. Strain ADPe, <i>Arthrobacter</i> sp. Strain TES, <i>Variovorax</i> sp. Strain 38R, and <i>Chelatobacter</i> sp. Strain SR38 Open
We report here the complete genome sequences of four atrazine-degrading bacteria. Their genomes will serve as references for determining the genetic changes that have occurred during an evolution experiment.
View article: Correction to: Common bean resistance to Xanthomonas is associated with upregulation of the salicylic acid pathway and downregulation of photosynthesis
Correction to: Common bean resistance to Xanthomonas is associated with upregulation of the salicylic acid pathway and downregulation of photosynthesis Open
View article: Common bean resistance to Xanthomonas is associated with upregulation of the salicylic acid pathway and downregulation of photosynthesis
Common bean resistance to Xanthomonas is associated with upregulation of the salicylic acid pathway and downregulation of photosynthesis Open
View article: Identification of the First Oomycete Mating-type Locus Sequence in the Grapevine Downy Mildew Pathogen, Plasmopara viticola
Identification of the First Oomycete Mating-type Locus Sequence in the Grapevine Downy Mildew Pathogen, Plasmopara viticola Open
View article: Common bean resistance to Xanthomonas is associated with upregulation of the salicylic acid pathway and downregulation of photosynthesis.
Common bean resistance to Xanthomonas is associated with upregulation of the salicylic acid pathway and downregulation of photosynthesis. Open
Background: Common bacterial blight (CBB) caused by Xanthomonas phaseoli pv. phaseoli and Xanthomonas citri pv. fuscans is one of the major threats to common bean crops ( Phaseolus vulgaris L.). Resistance to CBB is particularly complex as…
View article: The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest
The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest Open
View article: Common bean resistance to Xanthomonas is associated with upregulation of the salicylic acid pathway and downregulation of photosynthesis.
Common bean resistance to Xanthomonas is associated with upregulation of the salicylic acid pathway and downregulation of photosynthesis. Open
Background: Common bacterial blight (CBB) caused by Xanthomonas phaseoli pv. phaseoli and Xanthomonas citri pv. fuscans is one of the major threats to common bean crops (Phaseolus vulgaris L.). Resistance to CBB is particularly complex as …
View article: Common bean resistance to Xanthomonas is associated with upregulation of the salicylic acid pathway and downregulation of photosynthesis
Common bean resistance to Xanthomonas is associated with upregulation of the salicylic acid pathway and downregulation of photosynthesis Open
Background: Common bacterial blight (CBB) caused by Xanthomonas phaseoli pv. phaseoli and Xanthomonas citri pv. fuscans is one of the major threats to common bean crops (Phaseolus vulgaris L.). Resistance to CBB is particularly complex as …
View article: Identification of the first oomycete mating-type locus sequence in the grapevine downy mildew pathogen,<i>Plasmopara viticola</i>
Identification of the first oomycete mating-type locus sequence in the grapevine downy mildew pathogen,<i>Plasmopara viticola</i> Open
Mating types are self-incompatibility systems that promote outcrossing in plants, fungi and oomycetes. Mating-type genes have been widely studied in plants and fungi, but have yet to be identified in oomycetes, eukaryotic organisms closely…
View article: A Long Read project to find optimal technologic combinations for genome assembly and variability, epigenetic marks detection and metagenomic analysis
A Long Read project to find optimal technologic combinations for genome assembly and variability, epigenetic marks detection and metagenomic analysis Open
View article: Additional file 16 of Common bean resistance to Xanthomonas is associated with upregulation of the salicylic acid pathway and downregulation of photosynthesis
Additional file 16 of Common bean resistance to Xanthomonas is associated with upregulation of the salicylic acid pathway and downregulation of photosynthesis Open
Additional file 16: Table S12. Results of the enrichment tests according to the core, BAT93-specific or JaloEEP558-specific transcriptome and according to different log2FC threshold.
View article: Additional file 14 of Common bean resistance to Xanthomonas is associated with upregulation of the salicylic acid pathway and downregulation of photosynthesis
Additional file 14 of Common bean resistance to Xanthomonas is associated with upregulation of the salicylic acid pathway and downregulation of photosynthesis Open
Additional file 14: Table S10. List of DEGs in the four QRLs to CBB described in the progeny of BAT93xJaloEEP558 (Nodari et al., 1993) [50].
View article: Additional file 13 of Common bean resistance to Xanthomonas is associated with upregulation of the salicylic acid pathway and downregulation of photosynthesis
Additional file 13 of Common bean resistance to Xanthomonas is associated with upregulation of the salicylic acid pathway and downregulation of photosynthesis Open
Additional file 13: Table S9. List of DEGs with an inverse expression pattern between BAT93 and JaloEEP558.
View article: Additional file 6 of Common bean resistance to Xanthomonas is associated with upregulation of the salicylic acid pathway and downregulation of photosynthesis
Additional file 6 of Common bean resistance to Xanthomonas is associated with upregulation of the salicylic acid pathway and downregulation of photosynthesis Open
Additional file 6: Table S2. List of homologs shared by BAT93 and JaloEEP558.
View article: Additional file 7 of Common bean resistance to Xanthomonas is associated with upregulation of the salicylic acid pathway and downregulation of photosynthesis
Additional file 7 of Common bean resistance to Xanthomonas is associated with upregulation of the salicylic acid pathway and downregulation of photosynthesis Open
Additional file 7: Table S3. List of DEGs in BAT93 and JaloEEP558 48 h after inoculation by X. phaseoli pv. phaseoli strain CFBP6546R.
View article: Additional file 11 of Common bean resistance to Xanthomonas is associated with upregulation of the salicylic acid pathway and downregulation of photosynthesis
Additional file 11 of Common bean resistance to Xanthomonas is associated with upregulation of the salicylic acid pathway and downregulation of photosynthesis Open
Additional file 11.
View article: Additional file 5 of Common bean resistance to Xanthomonas is associated with upregulation of the salicylic acid pathway and downregulation of photosynthesis
Additional file 5 of Common bean resistance to Xanthomonas is associated with upregulation of the salicylic acid pathway and downregulation of photosynthesis Open
Additional file 5: Table S1. Number of genes shared among common bean genomes, as determined by reciprocal blastp (e-value <1E-6).
View article: Additional file 10 of Common bean resistance to Xanthomonas is associated with upregulation of the salicylic acid pathway and downregulation of photosynthesis
Additional file 10 of Common bean resistance to Xanthomonas is associated with upregulation of the salicylic acid pathway and downregulation of photosynthesis Open
Additional file 10: Table S6. List of enriched MapMan bins in the BAT93-specific and JaloEEP558-specific transcriptomes.
View article: Additional file 17 of Common bean resistance to Xanthomonas is associated with upregulation of the salicylic acid pathway and downregulation of photosynthesis
Additional file 17 of Common bean resistance to Xanthomonas is associated with upregulation of the salicylic acid pathway and downregulation of photosynthesis Open
Additional file 17: Table S13. Primers used for RT-qPCR assays.
View article: Additional file 12 of Common bean resistance to Xanthomonas is associated with upregulation of the salicylic acid pathway and downregulation of photosynthesis
Additional file 12 of Common bean resistance to Xanthomonas is associated with upregulation of the salicylic acid pathway and downregulation of photosynthesis Open
Additional file 12: Table S8. List of DEGs with |Δlog2FC| > 5.