Robert A. Koetsier
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View article: Using cross-species co-expression to predict metabolic interactions in microbiomes
Using cross-species co-expression to predict metabolic interactions in microbiomes Open
In microbial ecosystems, metabolic interactions are key determinants of species’ relative abundance and activity. Given the immense number of possible interactions in microbial communities, their experimental characterization is best guide…
View article: Using cross-species co-expression to predict metabolic interactions in microbiomes
Using cross-species co-expression to predict metabolic interactions in microbiomes Open
In microbial ecosystems, metabolic interactions are key determinants of species’ relative abundance and activity. Given the immense number of possible interactions in microbial communities, their experimental characterization is best guide…
View article: antiSMASH 8.0: extended gene cluster detection capabilities and analyses of chemistry, enzymology, and regulation
antiSMASH 8.0: extended gene cluster detection capabilities and analyses of chemistry, enzymology, and regulation Open
Microorganisms synthesize small bioactive compounds through their secondary or specialized metabolism. Those compounds play an important role in microbial interactions and soil health, but are also crucial for the development of pharmaceut…
View article: Effective data visualization strategies in untargeted metabolomics
Effective data visualization strategies in untargeted metabolomics Open
Untargeted metabolomics faces researchers with complex processing, analysis, and interpretation tasks. Here, we review computational tools from the perspective of information visualization and underpin its critical role and importance to t…
View article: SeedMatExplorer: The transcriptome atlas of Arabidopsis seed maturation
SeedMatExplorer: The transcriptome atlas of Arabidopsis seed maturation Open
Seed maturation is a critical developmental phase during which seeds acquire essential traits for nutritional value and desiccation survival. Abscisic acid (ABA) signalling has long been recognized as a key positive regulator of this proce…