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View article: Capacity development for technology adoption in fisheries and conservation requires two-way learning
Capacity development for technology adoption in fisheries and conservation requires two-way learning Open
Capacity development is pivotal to meeting global development goals, as demonstrated by its prominence in the Sustainable Development Goals and other international agreements. Yet, despite this growing recognition, challenges persist in tr…
View article: Emerging Topics and New Directions in Statistical Ecology
Emerging Topics and New Directions in Statistical Ecology Open
Ecological science relies on robust estimates of the abundance, diversity, and spatial distribution of individuals and species, but these quantities are notoriously difficult to observe directly. Data collected on these quantities not only…
View article: Proper account of auto-correlations improves decoding performances of state-space (semi) Markov models
Proper account of auto-correlations improves decoding performances of state-space (semi) Markov models Open
State-space models are widely used in ecology to infer hidden behaviors. This study develops an extensive numerical simulation-estimation experiment to evaluate the state decoding accuracy of four simple state-space models. These models ar…
View article: nicobez/H-S-MM_paper_figures: figures
nicobez/H-S-MM_paper_figures: figures Open
R scripts to produce all the figures of the HSMM paper
View article: Four principles for improved statistical ecology
Four principles for improved statistical ecology Open
Increasing attention has been drawn to the misuse of statistical methods over recent years, with particular concern about the prevalence of practices such as poor experimental design, cherry picking and inadequate reporting. These failures…
View article: Albatross movement suggests sensitivity to infrasound cues at sea
Albatross movement suggests sensitivity to infrasound cues at sea Open
The ways in which seabirds navigate over very large spatial scales remain poorly understood. While olfactory and visual information can provide guidance over short distances, their range is often limited to 100s km, far below the navigatio…
View article: Boldness predicts plasticity in flight responses to winds
Boldness predicts plasticity in flight responses to winds Open
Behavioural plasticity can allow populations to adjust to environmental change when genetic evolution is too slow to keep pace. However, its constraints are not well understood. Personality is known to shape individual behaviour, but its r…
View article: Graphlet correlation distance to compare small graphs
Graphlet correlation distance to compare small graphs Open
Graph models are standard for representing mutual relationships between sets of entities. Often, graphs deal with a large number of entities with a small number of connections (e.g. social media relationships, infectious disease spread). T…
View article: Towards a responsible machine learning approach to identify forced labor in fisheries
Towards a responsible machine learning approach to identify forced labor in fisheries Open
Many fishing vessels use forced labor, but identifying vessels that engage in this practice is challenging because few are regularly inspected. We developed a positive-unlabeled learning algorithm using vessel characteristics and movement …
View article: Four principles for improved statistical ecology
Four principles for improved statistical ecology Open
Increasing attention has been drawn to the misuse of statistical methods over recent years, with particular concern about the prevalence of practices such as poor experimental design, cherry-picking and inadequate reporting. These failures…
View article: Scaling of ear morphology across 127 bird species and its implications for hearing performance
Scaling of ear morphology across 127 bird species and its implications for hearing performance Open
The dimensions of auditory structures among animals of varying body size can have implications for hearing performance. Larger animals often have a hearing range focused on lower frequencies than smaller animals, which may be explained by …
View article: Code of conduct for the useR! Knowledgebase and useR2021ZH Slack
Code of conduct for the useR! Knowledgebase and useR2021ZH Slack Open
This code of conduct was developed for the useR2021ZH Slack, the useR! Working group channel and meetings, the useR! Knowledgebase through GitLab/GitHub, who are expected to abide by this code of conduct and show respect and courtesy to ot…
View article: Seasonal variation and group size affect movement patterns of two pelagic dolphin species (Lagenorhynchus obscurus and Delphinus delphis)
Seasonal variation and group size affect movement patterns of two pelagic dolphin species (Lagenorhynchus obscurus and Delphinus delphis) Open
Movement is a key factor in the survival and reproduction of most organisms with important links to bioenergetics and population dynamics. Animals use movement strategies that minimize the costs of locating resources, maximizing energy gai…
View article: Ten simple rules to host an inclusive conference
Ten simple rules to host an inclusive conference Open
Conferences are spaces to meet and network within and across academic and technical fields, learn about new advances, and share our work. They can help define career paths and create long-lasting collaborations and opportunities. However, …
View article: Revealing the Global Longline Fleet with Satellite Radar
Revealing the Global Longline Fleet with Satellite Radar Open
Because many vessels use the Automatic Identification System (AIS) to broadcast GPS positions, recent advances in satellite technology have enabled us to map global fishing activity. Understanding of human activity at sea, however, is limi…
View article: Aquatic birds have middle ears adapted to amphibious lifestyles
Aquatic birds have middle ears adapted to amphibious lifestyles Open
Birds exhibit wide variation in their use of aquatic environments, on a spectrum from entirely terrestrial, through amphibious, to highly aquatic. Although there are limited empirical data on hearing sensitivity of birds underwater, mounti…
View article: Infrasound as a Cue for Seabird Navigation
Infrasound as a Cue for Seabird Navigation Open
Seabirds are amongst the most mobile of all animal species and spend large amounts of their lives at sea. They cross vast areas of ocean that appear superficially featureless, and our understanding of the mechanisms that they use for navig…
View article: Spatio-Temporal Determination of Small-Scale Vessels’ Fishing Grounds Using a Vessel Monitoring System in the Southeastern Gulf of Mexico
Spatio-Temporal Determination of Small-Scale Vessels’ Fishing Grounds Using a Vessel Monitoring System in the Southeastern Gulf of Mexico Open
In most small-scale fisheries (SSF), there is limited or null information about the distribution and spatial extent of the fishing grounds where the fleets operate, due to the lack of explicit spatial and temporal data. This information is…
View article: Identifying partners at sea from joint movement metrics of pelagic pair trawlers
Identifying partners at sea from joint movement metrics of pelagic pair trawlers Open
Here, we present an approach to identify partners at sea based on fishing track analysis, and describe this behaviour in several fleets: pelagic pair trawlers, large and small bottom otter trawlers, mid-water otter trawlers, all in the Nor…
View article: Identifying partners at sea on contrasting fisheries around the world
Identifying partners at sea on contrasting fisheries around the world Open
Here we present an approach to identify partners at sea based on fishing track analysis, and describe this behaviour in six different fleets: 1) pelagic pair trawlers, 2) large bottom otter trawlers, 3) small bottom otter trawlers, 4) mid-…
View article: Sex‐specific effects of wind on the flight decisions of a sexually dimorphic soaring bird
Sex‐specific effects of wind on the flight decisions of a sexually dimorphic soaring bird Open
In a highly dynamic airspace, flying animals are predicted to adjust foraging behaviour to variable wind conditions to minimize movement costs. Sexual size dimorphism is widespread in wild animal populations, and for large soaring birds wh…
View article: A decade of movement ecology
A decade of movement ecology Open
Movement is fundamental to life, shaping population dynamics, biodiversity patterns, and ecosystem structure. Recent advances in tracking technology have enabled fundamental questions about movement to be tackled, leading to the developmen…
View article: Sex-specific effects of wind on the flight decisions of a sexually-dimorphic soaring bird: data and R code
Sex-specific effects of wind on the flight decisions of a sexually-dimorphic soaring bird: data and R code Open
This repository is a companion to the manuscript "Sex-specific effects of wind on the flight decisions of a sexually-dimorphic soaring bird", from Thomas A. Clay, Rocio Joo, Henri Weimerskirch, Richard A. Phillips, Olivier den Ouden, Mathi…
View article: Data_OCEAN_SENTINEL_Weimerskirch_et_al_2018_2019
Data_OCEAN_SENTINEL_Weimerskirch_et_al_2018_2019 Open
The file contains traking data of albatrosses from Crozet, Kerguelen, Amsterdam and Marion Islands, including identity, location, presence of vessels and detection of radar emission. The data are use in various papers. For additional infor…
View article: rociojoo/RmovementPaperRep: Navigating through the R packages for movement: Supporting information
rociojoo/RmovementPaperRep: Navigating through the R packages for movement: Supporting information Open
This repository is a companion to the manuscript "Navigating through the R packages for movement: a review for users and developers", from Rocio Joo, Matthew E. Boone, Thomas A. Clay, Samantha C. Patrick, Susana Clusella-Trullas, and Mathi…
View article: A Decade of Movement Ecology
A Decade of Movement Ecology Open
Movement is fundamental to life, shaping population dynamics, biodiversity patterns, and ecosystem structure. Recent advances in tracking technology have enabled fundamental questions about movement to be tackled, leading to the developmen…