Ross Crowhurst
YOU?
Author Swipe
View article: Development of a Novel Stress and Immune Gene Panel for the Australasian Snapper (Chrysophrys auratus)
Development of a Novel Stress and Immune Gene Panel for the Australasian Snapper (Chrysophrys auratus) Open
Background: Snapper (Chrysophrys auratus) is a commercially, recreationally and culturally important teleost species in New Zealand and has been selected as a potential new species for aquaculture. Selective breeding to enhance stress tole…
View article: Identification and Characterization of Innate Immunity in <i>Actinidia melanandra</i> in Response to <i>Pseudomonas syringae</i> pv. <i>actinidiae</i>
Identification and Characterization of Innate Immunity in <i>Actinidia melanandra</i> in Response to <i>Pseudomonas syringae</i> pv. <i>actinidiae</i> Open
Pseudomonas syringae pv. actinidiae biovar 3 (Psa3) has decimated kiwifruit orchards growing susceptible kiwifruit Actinidia chinensis varieties. Effector loss has occurred recently in Psa3 isolates from resistant kiwifruit germplasm, resu…
View article: AssemblyQC: a Nextflow pipeline for reproducible reporting of assembly quality
AssemblyQC: a Nextflow pipeline for reproducible reporting of assembly quality Open
Summary Genome assembly projects have grown exponentially due to breakthroughs in sequencing technologies and assembly algorithms. Evaluating the quality of genome assemblies is critical to ensure the reliability of downstream analysis and…
View article: AssemblyQC: A NextFlow Pipeline for Reproducible Reporting of Assembly Quality
AssemblyQC: A NextFlow Pipeline for Reproducible Reporting of Assembly Quality Open
Summary Genome assembly projects have grown exponentially due to breakthroughs in sequencing technologies and assembly algorithms. Evaluating the quality of genome assemblies is critical to ensure the reliability of downstream analysis and…
View article: Identification and characterization of innate immunity in<i>Actinidia melanandra</i>in response to<i>Pseudomonas syringae</i>pv.<i>actinidiae</i>
Identification and characterization of innate immunity in<i>Actinidia melanandra</i>in response to<i>Pseudomonas syringae</i>pv.<i>actinidiae</i> Open
Pseudomonas syringae pv. actinidiae biovar 3 (Psa3) has decimated kiwifruit orchards growing susceptible kiwifruit Actinidia chinensis varieties. Effector loss has occurred recently in Psa3 isolates from resistant kiwifruit germplasm, resu…
View article: First Chromosome-Scale Assembly and Deep Floral-Bud Transcriptome of a Male Kiwifruit
First Chromosome-Scale Assembly and Deep Floral-Bud Transcriptome of a Male Kiwifruit Open
DATA REPORT article Front. Genet., 16 May 2022Sec. Plant Genomics https://doi.org/10.3389/fgene.2022.852161
View article: The Genomics and Population Genomics of the Light Brown Apple Moth, Epiphyas postvittana, an Invasive Tortricid Pest of Horticulture
The Genomics and Population Genomics of the Light Brown Apple Moth, Epiphyas postvittana, an Invasive Tortricid Pest of Horticulture Open
The light brown apple moth, Epiphyas postvittana is an invasive, polyphagous pest of horticultural systems around the world. With origins in Australia, the pest has subsequently spread to New Zealand, Hawaii, California and Europe, where i…
View article: The Gillenia trifoliata genome reveals dynamics correlated with growth and reproduction in Rosaceae
The Gillenia trifoliata genome reveals dynamics correlated with growth and reproduction in Rosaceae Open
The Rosaceae family has striking phenotypic diversity and high syntenic conservation. Gillenia trifoliata is sister species to the Maleae tribe of apple and ~1000 other species. Gillenia has many putative ancestral features, such as herb/s…
View article: Construction of a high-density genetic map for hexaploid kiwifruit (<i>Actinidia chinensis</i> var. <i>deliciosa</i>) using genotyping by sequencing
Construction of a high-density genetic map for hexaploid kiwifruit (<i>Actinidia chinensis</i> var. <i>deliciosa</i>) using genotyping by sequencing Open
Commercially grown kiwifruit (genus Actinidia) are generally of two sub-species which have a base haploid genome of 29 chromosomes. The yellow-fleshed Actinidia chinensis var. chinensis, is either diploid (2n = 2x = 58) or tetraploid (2n =…
View article: Multiple quantitative trait loci contribute to resistance to bacterial canker incited by Pseudomonas syringae pv. actinidiae in kiwifruit (Actinidia chinensis)
Multiple quantitative trait loci contribute to resistance to bacterial canker incited by Pseudomonas syringae pv. actinidiae in kiwifruit (Actinidia chinensis) Open
Pseudomonas syringae pv. actinidiae (Psa) biovar 3, a virulent, canker-inducing pathogen is an economic threat to the kiwifruit (Actinidia spp.) industry worldwide. The commercially grown diploid (2×) A. chinensis var. chinensis is more su…
View article: Molecular Characterisation of a Supergene Conditioning Super-High Vitamin C in Kiwifruit Hybrids
Molecular Characterisation of a Supergene Conditioning Super-High Vitamin C in Kiwifruit Hybrids Open
During analysis of kiwifruit derived from hybrids between the high vitamin C (ascorbic acid; AsA) species Actinidia eriantha and A. chinensis, we observed bimodal segregation of fruit AsA concentration suggesting major gene segregation. To…
View article: Molecular Characterization of a Supergene Conditioning Super-High Vitamin C in Kiwifruit Hybrids
Molecular Characterization of a Supergene Conditioning Super-High Vitamin C in Kiwifruit Hybrids Open
During analysis of kiwifruit derived from hybrids between the high AsA species Actinidia eriantha and A. chinensis var chinensis, we observed bimodal segregation of fruit AsA concentration suggesting major gene segregation. To test this hy…
View article: Multiple quantitative trait loci contribute tolerance to bacterial canker incited by<i>Pseudomonas syringae</i>pv.<i>actinidiae</i>in kiwifruit (<i>Actinidia chinensis</i>)
Multiple quantitative trait loci contribute tolerance to bacterial canker incited by<i>Pseudomonas syringae</i>pv.<i>actinidiae</i>in kiwifruit (<i>Actinidia chinensis</i>) Open
Pseudomonas syringae pv. actinidiae (Psa) Biovar 3, a virulent, canker-inducing pathogen is an economic threat to the kiwifruit ( Actinidia spp.) industry worldwide. The commercially grown diploid (2 x ) A. chinensis var. chinensis is more…
View article: A whole genome assembly of <i>Leptospermum scoparium</i> (Myrtaceae) for mānuka research
A whole genome assembly of <i>Leptospermum scoparium</i> (Myrtaceae) for mānuka research Open
We assembled the genome of Leptospermum scoparium ‘Crimson Glory’ using a combination of Illumina paired-end sequencing, high-throughput chromosome conformation capture (Hi-C) and high density genetic mapping. As ‘Crimson Glory’ is a varie…
View article: Additional file 1: of Genetic and cytological analyses reveal the recombination landscape of a partially differentiated plant sex chromosome in kiwifruit
Additional file 1: of Genetic and cytological analyses reveal the recombination landscape of a partially differentiated plant sex chromosome in kiwifruit Open
Table S1. Primer sequences for microsatellite analysis. (XLSX 16 kb)
View article: Common Variants of the Plant microRNA-168a Exhibit Differing Silencing Efficacy for Human Low-Density Lipoprotein Receptor Adaptor Protein 1 (LDLRAP1)
Common Variants of the Plant microRNA-168a Exhibit Differing Silencing Efficacy for Human Low-Density Lipoprotein Receptor Adaptor Protein 1 (LDLRAP1) Open
Background: The discovery that a plant microRNA (miRNAs) from rice (Oryza sativa miR168a) can modify post-transcriptional expression of the mammalian. Low-Density Lipoprotein Receptor Adaptor Protein 1 (LDLRAP1) gene highlights the potenti…
View article: Kiwifruit Genome Assembly Red5 Version Ps1.68.5
Kiwifruit Genome Assembly Red5 Version Ps1.68.5 Open
Draft assembly pseudomolecules plus repeat and gene model annotation files for kiwifruit Actinidia chinensis var. chinensis 'Red5'.
View article: Actinidia eriantha Accession EA01_01 low coverage genome assembly
Actinidia eriantha Accession EA01_01 low coverage genome assembly Open
Draft assembly scaffolds of kiwifruit Actinidia eriantha 'EA01_01'. This is a female vine derived from seed collected on Qi-Yuan Mt., Min-Qing, Fukien on 15/11/75 by Li Lai-Yung, Professor of Subtropical Pomology, University of Fukien, Peo…
View article: Actinidia eriantha Accession EA01_01 low coverage genome assembly
Actinidia eriantha Accession EA01_01 low coverage genome assembly Open
Draft assembly scaffolds of kiwifruit Actinidia eriantha 'EA01_01'. This is a female vine derived from seed collected on Qi-Yuan Mt., Min-Qing, Fukien on 15/11/75 by Li Lai-Yung, Professor of Subtropical Pomology, University of Fukien, Peo…
View article: Kiwifruit Genome Assembly Red5 Version Ps1.68.5
Kiwifruit Genome Assembly Red5 Version Ps1.68.5 Open
Draft assembly pseudomolecules plus repeat and gene model annotation files for kiwifruit Actinidia chinensis var. chinensis 'Red5'.
View article: BACRB - Parallel Sequencing of Barcoded BAC Clones&nbsp;by random tagging PCR v1
BACRB - Parallel Sequencing of Barcoded BAC Clones by random tagging PCR v1 Open
A genome is assembled by connecting large scaffolds via a collection of thousands of mate-paired ends of various sizes (3-20 kbp). Terminal ends of long DNA fragments can be obtained by sequencing large insert clones by Sanger sequencing, …
View article: Additional file 12: of A manually annotated Actinidia chinensis var. chinensis (kiwifruit) genome highlights the challenges associated with draft genomes and gene prediction in plants
Additional file 12: of A manually annotated Actinidia chinensis var. chinensis (kiwifruit) genome highlights the challenges associated with draft genomes and gene prediction in plants Open
Markers used in this study. List of names of extracted FASTA sequences for SNP markers used to construct the genome (TXT 841Â kb)
View article: Additional file 7: of A manually annotated Actinidia chinensis var. chinensis (kiwifruit) genome highlights the challenges associated with draft genomes and gene prediction in plants
Additional file 7: of A manually annotated Actinidia chinensis var. chinensis (kiwifruit) genome highlights the challenges associated with draft genomes and gene prediction in plants Open
Details of sequenced cDNAâ s generated. Fasta formatted sequences of 812 bidirectionally sequenced expressed sequence tag clones from A. chinensis var. chinensis used in evaluating manually annotated gene models of Red5. (FASTA 1204Â kb)
View article: Additional file 1: of A manually annotated Actinidia chinensis var. chinensis (kiwifruit) genome highlights the challenges associated with draft genomes and gene prediction in plants
Additional file 1: of A manually annotated Actinidia chinensis var. chinensis (kiwifruit) genome highlights the challenges associated with draft genomes and gene prediction in plants Open
Map back rates to the Red5 genome sequence.Summary of the numbers of input reads reads that align to the RED5 genome construction (XLSX 10Â kb)
View article: Additional file 5: of A manually annotated Actinidia chinensis var. chinensis (kiwifruit) genome highlights the challenges associated with draft genomes and gene prediction in plants
Additional file 5: of A manually annotated Actinidia chinensis var. chinensis (kiwifruit) genome highlights the challenges associated with draft genomes and gene prediction in plants Open
‘Hongyang’ Gene models that align to Red5 genome.List of Actinidia chinensis ‘Hongyang’ genes that align to the Red5 whole genome sequence. Additional file 5A: models from original ‘Hongyang’ annotation [14]. Additional file 5B: models fro…
View article: Additional file 6: of A manually annotated Actinidia chinensis var. chinensis (kiwifruit) genome highlights the challenges associated with draft genomes and gene prediction in plants
Additional file 6: of A manually annotated Actinidia chinensis var. chinensis (kiwifruit) genome highlights the challenges associated with draft genomes and gene prediction in plants Open
Revised â Hongyangâ genes omitted from the manually edited gene set. Average RNA-Seq read coverage of the 1069 KIR V2 models perfectly aligned to the Red5 genome without a protein match in the Red5 gene set. (XLSX 114Â kb)
View article: Additional file 2: of A manually annotated Actinidia chinensis var. chinensis (kiwifruit) genome highlights the challenges associated with draft genomes and gene prediction in plants
Additional file 2: of A manually annotated Actinidia chinensis var. chinensis (kiwifruit) genome highlights the challenges associated with draft genomes and gene prediction in plants Open
BAC alignment to chromosome 25.Table summarising alignments of contigs from 22 BAC clones to chromosome 25 of the Red5 assembly (XLSX 15Â kb)