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View article: Accurate<i>de novo</i>identification of biosynthetic gene clusters with GECCO
Accurate<i>de novo</i>identification of biosynthetic gene clusters with GECCO Open
Biosynthetic gene clusters (BGCs) are enticing targets for (meta)genomic mining efforts, as they may encode novel, specialized metabolites with potential uses in medicine and biotechnology. Here, we describe GECCO (GEne Cluster prediction …
View article: Comparative proteomics of related symbiotic mussel species reveals high variability of host–symbiont interactions
Comparative proteomics of related symbiotic mussel species reveals high variability of host–symbiont interactions Open
Deep-sea Bathymodiolus mussels and their chemoautotrophic symbionts are well-studied representatives of mutualistic host–microbe associations. However, how host–symbiont interactions vary on the molecular level between related host and sym…
View article: Data for the publication "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer"
Data for the publication "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer" Open
This dataset encompasses all data needed to reproduce the analyses presented in Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer You can also check the GitHub repository
View article: Data for the publication "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer"
Data for the publication "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer" Open
This dataset encompasses all data needed to reproduce the analyses presented in Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer You can also check the GitHub repository
View article: Metabolic and physiological interdependencies in the <i>Bathymodiolus azoricus</i> symbiosis
Metabolic and physiological interdependencies in the <i>Bathymodiolus azoricus</i> symbiosis Open
The hydrothermal vent mussel Bathymodiolus azoricus lives in an intimate symbiosis with two types of chemosynthetic Gammaproteobacteria in its gills: a sulfur oxidizer and a methane oxidizer. Despite numerous investigations over the last d…
View article: Nitrogen fixation in a chemoautotrophic lucinid symbiosis
Nitrogen fixation in a chemoautotrophic lucinid symbiosis Open
The shallow water bivalve Codakia orbicularis lives in symbiotic association with a sulfur-oxidizing bacterium in its gills. The endosymbiont fixes CO 2 and thus generates organic carbon compounds, which support the host's growth. To inves…
View article: Abundant toxin-related genes in the genomes of beneficial symbionts from deep-sea hydrothermal vent mussels
Abundant toxin-related genes in the genomes of beneficial symbionts from deep-sea hydrothermal vent mussels Open
Bathymodiolus mussels live in symbiosis with intracellular sulfur-oxidizing (SOX) bacteria that provide them with nutrition. We sequenced the SOX symbiont genomes from two Bathymodiolus species. Comparison of these symbiont genomes with th…
View article: Author response: Abundant toxin-related genes in the genomes of beneficial symbionts from deep-sea hydrothermal vent mussels
Author response: Abundant toxin-related genes in the genomes of beneficial symbionts from deep-sea hydrothermal vent mussels Open
Full text Figures and data Side by side Abstract eLife digest Introduction Results Discussion Materials and methods Appendix 1 Appendix 2 Appendix 3 Appendix 4 Data availability References Decision letter Author response Article and author…