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View article: The TGF-β mimic TGM4 achieves cell specificity through combinatorial surface co-receptor binding
The TGF-β mimic TGM4 achieves cell specificity through combinatorial surface co-receptor binding Open
View article: Reduced tillering and dwarfing genes alter root traits and rhizo‐economics in wheat
Reduced tillering and dwarfing genes alter root traits and rhizo‐economics in wheat Open
The tiller inhibition ( tin ) and Reduced height ( Rht ) genes strongly influence the carbon partitioning and architecture of wheat shoots, but their effects on the energy economy of roots have not been examined in detail. We examined mult…
View article: An autoactive <i>NB-LRR</i> gene causes <i>Rht13</i> dwarfism in wheat
An autoactive <i>NB-LRR</i> gene causes <i>Rht13</i> dwarfism in wheat Open
Semidwarfing genes have greatly increased wheat yields globally, yet the widely used gibberellin (GA)-insensitive genes Rht-B1b and Rht-D1b have disadvantages for seedling emergence. Use of the GA-sensitive semidwarfing gene Rht13 avoids t…
View article: Photolysis of caged cytokinin in single cells of Arabidopsis thaliana
Photolysis of caged cytokinin in single cells of Arabidopsis thaliana Open
Background Cytokinins are a class of phytohormone that play a crucial role in the development of plants. They are involved in the regulation of nearly every aspect of plant growth, from germination to senescence. The role of cytokinins in …
View article: Deep learning with multisite data reveals the lasting effects of soil type, tillage and vegetation history on biopore genesis
Deep learning with multisite data reveals the lasting effects of soil type, tillage and vegetation history on biopore genesis Open
Soil biopore genesis is a dynamic and context-dependent process. Yet integrative investigations of biopore genesis under varying soil type, tillage and vegetation history are rare. Recent advances in Machine Learning (ML) made faster and m…
View article: Dataset used in "Deep learning with multisite data reveals the lasting effects of soil type, tillage and vegetation history on biopore genesis"
Dataset used in "Deep learning with multisite data reveals the lasting effects of soil type, tillage and vegetation history on biopore genesis" Open
Please see the paper "Deep learning with multisite data reveals the lasting effects of soil type, tillage and vegetation history on biopore genesis" how the images were captured, manual counting was performed, training datasets were prepar…
View article: Dataset used in "Deep learning with multisite data reveals the lasting effects of soil type, tillage and vegetation history on biopore genesis"
Dataset used in "Deep learning with multisite data reveals the lasting effects of soil type, tillage and vegetation history on biopore genesis" Open
Please see the paper "Deep learning with multisite data reveals the lasting effects of soil type, tillage and vegetation history on biopore genesis" how the images were captured, manual counting was performed, training datasets were prepar…
View article: An autoactive <i>NB-LRR</i> gene causes <i>Rht13</i> dwarfism in wheat
An autoactive <i>NB-LRR</i> gene causes <i>Rht13</i> dwarfism in wheat Open
Semidwarfing genes have greatly increased wheat yields globally, yet the widely used gibberellin (GA) insensitive genes Rht-B1b and Rht-D1b have disadvantages for seedling emergence. Use of the GA sensitive semidwarfing gene Rht13 avoids t…
View article: Multienvironment QTL analysis delineates a major locus associated with homoeologous exchanges for water‐use efficiency and seed yield in canola
Multienvironment QTL analysis delineates a major locus associated with homoeologous exchanges for water‐use efficiency and seed yield in canola Open
Canola varieties exhibit variation in drought avoidance and drought escape traits, reflecting adaptation to water‐deficit environments. Our understanding of underlying genes and their interaction across environments in improving crop produ…
View article: Multi-environment QTL analysis delineates a major locus associated with homoeologous exchanges for water-use efficiency and seed yield in allopolyploid<i>Brassica napus</i>
Multi-environment QTL analysis delineates a major locus associated with homoeologous exchanges for water-use efficiency and seed yield in allopolyploid<i>Brassica napus</i> Open
Summary Canola varieties exhibit discernible variation in drought avoidance and drought escape traits, suggesting its adaptation to water-deficit environments. However, the underlying mechanisms are poorly understood. A doubled haploid (DH…
View article: Vascular Connections Into the Grape Berry: The Link of Structural Investment to Seededness
Vascular Connections Into the Grape Berry: The Link of Structural Investment to Seededness Open
Vascular bundles in the grape pedicel and berry contain the conduits, phloem and xylem, for transport of water, sugar, nutrients and signals into and through the grape berry and play a critical role in berry growth and composition. Here, w…
View article: New methods for confocal imaging of infection threads in crop and model legumes
New methods for confocal imaging of infection threads in crop and model legumes Open
View article: Characterization and Genetic Mapping of Black Root Rot Resistance in Gossypium arboreum L.
Characterization and Genetic Mapping of Black Root Rot Resistance in Gossypium arboreum L. Open
Black root rot (BRR) is an economically important disease of cotton and other crops, especially in cooler regions with short growing seasons. Symptoms include black discoloration of the roots, reduced number of lateral roots and stunted or…
View article: Digging roots is easier with AI
Digging roots is easier with AI Open
The scale of root quantification in research is often limited by the time required for sampling, measurement and processing samples. Recent developments in Convolutional Neural Networks (CNN) have made faster and more accurate plant image …
View article: Dataset and manual counts used in "Digging roots is easier with AI"
Dataset and manual counts used in "Digging roots is easier with AI" Open
Please see the paper "Digging roots is easier with AI" how the images were captured and the manual counting was performed for the three destructive sampling procedures.
View article: Training dataset and final models used in "Digging roots is easier with AI"
Training dataset and final models used in "Digging roots is easier with AI" Open
See the paper ''Digging roots is easier with AI' for an explanation of how the models and datasets were created. The images are extracted from the larger datasets available from 10.5281/zenodo.4300067 using the RootPainter software.
View article: Profile wall dataset used in "Digging roots is easier with AI"
Profile wall dataset used in "Digging roots is easier with AI" Open
Profile wall images
View article: Dataset and manual counts used in "Digging roots is easier with AI"
Dataset and manual counts used in "Digging roots is easier with AI" Open
Please see the paper "Digging roots is easier with AI" how the images were captured and the manual counting was performed for the three destructive sampling procedures.
View article: Training dataset and final models used in "Digging roots is easier with AI"
Training dataset and final models used in "Digging roots is easier with AI" Open
See the paper ''Digging roots is easier with AI' for an explanation of how the models and datasets were created. The images are extracted from the larger datasets available from 10.5281/zenodo.4300067 using the RootPainter software.
View article: Phenotypes Conferred by Wheat Multiple Pathogen Resistance Locus, <i>Sr2</i>, Include Cell Death in Response to Biotic and Abiotic Stresses
Phenotypes Conferred by Wheat Multiple Pathogen Resistance Locus, <i>Sr2</i>, Include Cell Death in Response to Biotic and Abiotic Stresses Open
The wheat Sr2 locus confers partial resistance to four biotrophic pathogens: wheat stem rust (Puccinia graminis f. sp. tritici), leaf rust (P. triticina), stripe rust (P. striiformis f. sp. tritici), and powdery mildew (Blumeria graminis f…
View article: Nodulating Legumes Are Distinguished by a Sensitivity to Cytokinin in the Root Cortex Leading to Pseudonodule Development
Nodulating Legumes Are Distinguished by a Sensitivity to Cytokinin in the Root Cortex Leading to Pseudonodule Development Open
Root nodule symbiosis (RNS) is a feature confined to a single clade of plants, the Fabids. Among Fabids capable of RNS, legumes form root cortex-based nodules in symbioses with rhizobia, while actinorhizal species form lateral root-based n…
View article: Altered Expression of the Malate-Permeable Anion Channel OsALMT4 Reduces the Growth of Rice Under Low Radiance
Altered Expression of the Malate-Permeable Anion Channel OsALMT4 Reduces the Growth of Rice Under Low Radiance Open
We examined the function of OsALMT4 in rice (Oryza sativa L.) which is a member of the aluminum-activated malate transporter family. Previous studies showed that OsALMT4 localizes to the plasma membrane and that expression in…
View article: Multiple mechanisms for enhanced plasmodesmata density in disparate subtypes of C4 grasses
Multiple mechanisms for enhanced plasmodesmata density in disparate subtypes of C4 grasses Open
Proliferation of plasmodesmata (PD) connections between bundle sheath (BS) and mesophyll (M) cells has been proposed as a key step in the evolution of two-cell C4 photosynthesis; However, a lack of quantitative data has hampered further ex…
View article: Comparative Lipidomics and Proteomics of Lipid Droplets in the Mesocarp and Seed Tissues of Chinese Tallow (Triadica sebifera)
Comparative Lipidomics and Proteomics of Lipid Droplets in the Mesocarp and Seed Tissues of Chinese Tallow (Triadica sebifera) Open
Lipid droplets (LDs) are composed of a monolayer of phospholipids (PLs), surrounding a core of non-polar lipids that consist mostly of triacylglycerols (TAGs) and to a lesser extent diacylglycerols. In this study, lipidome analysis illustr…
View article: Step changes in leaf oil accumulation via iterative metabolic engineering
Step changes in leaf oil accumulation via iterative metabolic engineering Open
Synthesis and accumulation of plant oils in the entire vegetative biomass offers the potential to deliver yields surpassing those of oilseed crops. However, current levels still fall well short of those typically found in oilseeds. Here we…
View article: Genetic enhancement of oil content in potato tuber (<i>Solanum tuberosum</i> L.) through an integrated metabolic engineering strategy
Genetic enhancement of oil content in potato tuber (<i>Solanum tuberosum</i> L.) through an integrated metabolic engineering strategy Open
Summary Potato tuber is a high yielding food crop known for its high levels of starch accumulation but only negligible levels of triacylglycerol ( TAG ). In this study, we evaluated the potential for lipid production in potato tubers by si…
View article: The Metabolite Pathway between Bundle Sheath and Mesophyll: Quantification of Plasmodesmata in Leaves of C<sub>3</sub> and C<sub>4</sub> Monocots
The Metabolite Pathway between Bundle Sheath and Mesophyll: Quantification of Plasmodesmata in Leaves of C<sub>3</sub> and C<sub>4</sub> Monocots Open
C4 photosynthesis is characterized by a CO2-concentrating mechanism between mesophyll (M) and bundle sheath (BS) cells of leaves. This generates high metabolic fluxes between these cells, through interconnecting plasmodesmata (PD). Quantif…
View article: Phenotypic, functional and kinetic parameters associated with early control of viremia in newborn macaques infected with attenuated SIV
Phenotypic, functional and kinetic parameters associated with early control of viremia in newborn macaques infected with attenuated SIV Open
View article: Deep Sequencing of the Fruit Transcriptome and Lipid Accumulation in a Non-Seed Tissue of Chinese Tallow, a Potential Biofuel Crop
Deep Sequencing of the Fruit Transcriptome and Lipid Accumulation in a Non-Seed Tissue of Chinese Tallow, a Potential Biofuel Crop Open
Chinese tallow (Triadica sebifera) is a valuable oilseed-producing tree that can grow in a variety of conditions without competing for food production, and is a promising biofuel feedstock candidate. The fruits are unique in that they cont…
View article: PEA-CLARITY: 3D molecular imaging of whole plant organs
PEA-CLARITY: 3D molecular imaging of whole plant organs Open