Runmao Lin
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View article: The diversity and keystone species of cucumber rhizosphere microbiome: Unveiling their role in driving cucumber growth and microbial communities
The diversity and keystone species of cucumber rhizosphere microbiome: Unveiling their role in driving cucumber growth and microbial communities Open
Our study demonstrates that specific keystone species are important in shaping the cucumber rhizosphere microbiome and plant growth. These results provide insights into agroecosystem-microbe interrelationships and provide a potential basis…
View article: Discovery of an SQS-PSY Domain-Containing Protein in Meloidogyne incognita Reveals Its Function in Parasitism
Discovery of an SQS-PSY Domain-Containing Protein in Meloidogyne incognita Reveals Its Function in Parasitism Open
Proteins containing the SQS-PSY domain, which include squalene synthetase (SQS), phytoene synthetase (PSY), and NDUFAF6, are functionally important and widely distributed in plants and animals. However, they have not been previously report…
View article: Effects of two Bacillus velezensis strains isolated from different sources on the growth of Capsicum annum
Effects of two Bacillus velezensis strains isolated from different sources on the growth of Capsicum annum Open
Microbial inoculants offer an environmentally friendly approach to enhance plant growth and control disease. In this study, two Bacillus velezensis strains, HKSSLJEBR3 (R3) and Ya-1 were isolated from pepper plant roots and tropical rainfo…
View article: Assembly, Annotation, and Comparative Analysis of Mitochondrial Genomes in Trichoderma
Assembly, Annotation, and Comparative Analysis of Mitochondrial Genomes in Trichoderma Open
Trichoderma is a widely studied ascomycete fungal genus, including more than 400 species. However, genetic information on Trichoderma is limited, with most species reporting only DNA barcodes. Mitochondria possess their own distinct DNA th…
View article: Development of Machine Learning Methods for Accurate Prediction of Plant Disease Resistance
Development of Machine Learning Methods for Accurate Prediction of Plant Disease Resistance Open
The traditional method of screening plants for disease resistance phenotype is both time-consuming and costly. Genomic selection offers a potential solution to improve efficiency, but accurately predicting plant disease resistance remains …
View article: Characterization and evaluation of the morphological attributes of Ethiopian mustard (Brassica carinata A. Braun) landraces
Characterization and evaluation of the morphological attributes of Ethiopian mustard (Brassica carinata A. Braun) landraces Open
Ethiopian mustard ( Brassica carinata A. Braun) is one of the Brassica leafy vegetables and oilseed crops, which can withstand adverse environmental conditions. This study was conducted to characterize and evaluate the leaf attributes of 3…
View article: Parasitism of Hirsutella rhossiliensis on Different Nematodes and Its Endophytism Promoting Plant Growth and Resistance against Root-Knot Nematodes
Parasitism of Hirsutella rhossiliensis on Different Nematodes and Its Endophytism Promoting Plant Growth and Resistance against Root-Knot Nematodes Open
The endoparasitic fungus Hirsutella rhossiliensis is an important biocontrol agent of cyst nematodes in nature. To determine the potential parasitism of the fungus on a non-natural host, the pinewood nematode (Bursaphelenchus xylophilus) l…
View article: Correction: Improved Brassica oleracea JZS assembly reveals significant changing of LTR‑RT dynamics in different morphotypes
Correction: Improved Brassica oleracea JZS assembly reveals significant changing of LTR‑RT dynamics in different morphotypes Open
View article: Mitochondrial‐targeting effector RsIA_CtaG/Cox11 in <i>Rhizoctonia solani</i> <scp>AG</scp> ‐1 <scp>IA</scp> has two functions: plant immunity suppression and cell death induction mediated by a rice cytochrome <i>c</i> oxidase subunit
Mitochondrial‐targeting effector RsIA_CtaG/Cox11 in <i>Rhizoctonia solani</i> <span>AG</span> ‐1 <span>IA</span> has two functions: plant immunity suppression and cell death induction mediated by a rice cytochrome <i>c</i> oxidase subunit Open
Rhizoctonia solani AG‐1 IA causes a necrotrophic rice disease and is a serious threat to rice production. To date, only a few effectors have been characterized in AG‐1 IA. We previously identified RsIA_CtaG/Cox11 and showed that infiltrati…
View article: A New Insight into 6-Pentyl-2H-pyran-2-one against Peronophythora litchii via TOR Pathway
A New Insight into 6-Pentyl-2H-pyran-2-one against Peronophythora litchii via TOR Pathway Open
The litchi downy blight disease of litchi caused by Peronophythora litchii accounts for severe losses in the field and during storage. While ample quantitative studies have shown that 6-pentyl-2H-pyran-2-one (6PP) possesses antifungal acti…
View article: Conserved noncoding sequences correlate with distant gene contacts in <i>Arabidopsis</i> and <i>Brassica</i>
Conserved noncoding sequences correlate with distant gene contacts in <i>Arabidopsis</i> and <i>Brassica</i> Open
Physical contact between genes distant on chromosomes is a potentially important way for genes to coordinate their expressions. To investigate the potential importance of distant contacts, we performed high‐throughput chromatin conformatio…
View article: URA3 as a Selectable Marker for Disruption and Functional Assessment of PacC Gene in the Entomopathogenic Fungus Isaria javanica
URA3 as a Selectable Marker for Disruption and Functional Assessment of PacC Gene in the Entomopathogenic Fungus Isaria javanica Open
An effective selection marker is necessary for genetic engineering and functional genomics research in the post-genomic era. Isaria javanica is an important entomopathogenic fungus with a broad host range and prospective biocontrol potenti…
View article: An Optimized Protocol for Detecting Guard Cell–specific Gene Expression by in situ RT-PCR in <em>Brassica rapa</em>
An Optimized Protocol for Detecting Guard Cell–specific Gene Expression by in situ RT-PCR in <em>Brassica rapa</em> Open
Since the genetic transformation of Chinese cabbage (Brassica rapa) has not been well developed, in situ RT-PCR is a valuable option for detecting guard cell-specific genes. We reported an optimized protocol of in situ RT-PCR by usi…
View article: Chromosomal-level genome assembly of potato tuberworm, Phthorimaea operculella: a pest of solanaceous crops
Chromosomal-level genome assembly of potato tuberworm, Phthorimaea operculella: a pest of solanaceous crops Open
The potato tuberworm, Phthorimaea operculella Zeller, is an oligophagous pest feeding on crops mainly belonging to the family Solanaceae. It is one of the most destructive pests of potato worldwide and attacks foliage and tubers in the fie…
View article: Roles of Species-Specific Legumains in Pathogenicity of the Pinewood Nematode Bursaphelenchus xylophilus
Roles of Species-Specific Legumains in Pathogenicity of the Pinewood Nematode Bursaphelenchus xylophilus Open
Peptidases are very important to parasites, which have central roles in parasite biology and pathogenesis. In this study, by comparative genome analysis, genome-wide peptidase diversities among plant-parasitic nematodes are estimated. We f…
View article: Secreted Glycosyltransferase RsIA_GT of Rhizoctonia solani AG-1 IA Inhibits Defense Responses in Nicotiana benthamiana
Secreted Glycosyltransferase RsIA_GT of Rhizoctonia solani AG-1 IA Inhibits Defense Responses in Nicotiana benthamiana Open
Anastomosis group AG-1 IA of Rhizoctonia solani Khün has a wide host range and threatens crop production. Various glycosyltransferases secreted by phytopathogenic fungi play an essential role in pathogenicity. Previously, we identified a g…
View article: Single‐cell transcriptome reveals differentiation between adaxial and abaxial mesophyll cells in <i>Brassica rapa</i>
Single‐cell transcriptome reveals differentiation between adaxial and abaxial mesophyll cells in <i>Brassica rapa</i> Open
Mesophyll cells are the main site of photosynthesis and the largest cell population in leaves, with tightly packed cylinder palisade mesophyll cells (PMCs) on the adaxial side and loosely arranged rounded spongy mesophyll cells (SMCs) on t…
View article: Genome Sequence Resource of <i>Sarocladium terricola</i> TR, an Endophytic Fungus as a Potential Biocontrol Agent Against <i>Meloidogyne incognita</i>
Genome Sequence Resource of <i>Sarocladium terricola</i> TR, an Endophytic Fungus as a Potential Biocontrol Agent Against <i>Meloidogyne incognita</i> Open
HomeMolecular Plant-Microbe Interactions®Vol. 35, No. 6Genome Sequence Resource of Sarocladium terricola TR, an Endophytic Fungus as a Potential Biocontrol Agent Against Meloidogyne incognita Previous RESOURCE ANNOUNCEMENT OPENOpen Access …
View article: Improved Reference Genome Annotation of Brassica rapa by Pacific Biosciences RNA Sequencing
Improved Reference Genome Annotation of Brassica rapa by Pacific Biosciences RNA Sequencing Open
The species Brassica rapa includes several important vegetable crops. The draft reference genome of B. rapa ssp. pekinensis was completed in 2011, and it has since been updated twice. The pangenome with structural variations of 18 B. rapa …
View article: Transposable element insertion: a hidden major source of domesticated phenotypic variation in <i>Brassica rapa</i>
Transposable element insertion: a hidden major source of domesticated phenotypic variation in <i>Brassica rapa</i> Open
Summary Transposable element (TE) is prevalent in plant genomes. However, studies on their impact on phenotypic evolution in crop plants are relatively rare, because systematically identifying TE insertions within a species has been a chal…
View article: Series-Spatial Transcriptome Profiling of Leafy Head Reveals the Key Transition Leaves for Head Formation in Chinese Cabbage
Series-Spatial Transcriptome Profiling of Leafy Head Reveals the Key Transition Leaves for Head Formation in Chinese Cabbage Open
Chinese cabbage is an important leaf heading vegetable crop. At the heading stage, its leaves across inner to outer show significant morphological differentiation. However, the genetic control of this complex leaf morphological differentia…
View article: Contig orders and orientations on Phthorimaea operculella chromosomes
Contig orders and orientations on Phthorimaea operculella chromosomes Open
Contig orders and orientations on Phthorimaea operculella chromosomes.
View article: Gene prediction for five Lepidopteran genomes
Gene prediction for five Lepidopteran genomes Open
Gene prediction for five genomes of Samia ricini (Sri), Dendrolimus punctatus (Dpu), Drepana arcuata (Dar), Tuta absoluta (Tab) and Carposina sasakii (Csa). 'Gene.cds', predicted nucleotide sequence of protein-coding genes; 'gene.pep', pre…
View article: Investigation of<i>Brassica</i>and its relative genomes in the post-genomics era
Investigation of<i>Brassica</i>and its relative genomes in the post-genomics era Open
The Brassicaceae family includes many economically important crop species, as well as cosmopolitan agricultural weed species. In addition, Arabidopsis thaliana, a member of this family, is used as a molecular model plant species. The genus…
View article: Expanding the genetic variation of <i>Brassica juncea</i> by introgression of the <i>Brassica rapa</i> genome
Expanding the genetic variation of <i>Brassica juncea</i> by introgression of the <i>Brassica rapa</i> genome Open
Brassica juncea is an important vegetable and oil crop cultivated worldwide. To increase its genetic variation, we introgressed the A genome of Brassica rapa into B. juncea. We used three each of heading and semi-heading B. juncea accessio…
View article: Phthorimaea operculella genome repeat sequences annotation
Phthorimaea operculella genome repeat sequences annotation Open
Phthorimaea operculella genome repeat sequences annotation information. chr1-15, repetitive sequence annotated from chromosomal 1 to 15; chr16-29, repetitive sequence annotated from chromosomal 16 to 29.
View article: Supplementary tables for 'Chromosomal-level genome assembly of potato tuberworm, Phthorimaea operculella: a pest of solanaceous crops'
Supplementary tables for 'Chromosomal-level genome assembly of potato tuberworm, Phthorimaea operculella: a pest of solanaceous crops' Open
Supplementary Table 1. Annotation of repeat sequences in Phthorimaea operculella. Supplementary Table 2. The 23 reported genomes used in this study. Supplementary Table 3. Domain …
View article: Improved reference genome annotation of <i>Brassica rapa</i> by PacBio RNA sequencing
Improved reference genome annotation of <i>Brassica rapa</i> by PacBio RNA sequencing Open
The species Brassica rapa includes several important vegetable crops. The draft reference genome of B. rapa ssp. pekinensis was completed in 2011, and it has since been updated twice. The pangenome with structural variations of 18 B. rapa …
View article: An optimized protocol for detecting guard cell specific gene expression by in situ RT-PCR in Brassica rapa
An optimized protocol for detecting guard cell specific gene expression by in situ RT-PCR in Brassica rapa Open
View article: BRAD V3.0: an upgraded Brassicaceae database
BRAD V3.0: an upgraded Brassicaceae database Open
The Brassicaceae Database (BRAD version 3.0, BRAD V3.0; http://brassicadb.cn) has evolved from the former Brassica Database (BRAD V2.0), and represents an important community portal hosting genome information for multiple Brassica and rela…