Runmin Wei YOU? Author Swipe

Last 10y

Dictionary of human intestinal organoid responses to secreted niche factors at single cell resolution Open

Meghan M. Capeling, Bob Chen, Kazeera Aliar, Elisa Penna, Verónica López , et al. · 2025

The intestinal epithelium is often a site of pathology, such as in inflammatory bowel disease (IBD), and its maintenance is highly modulated by interactions with the microenvironment. However, a systematic understanding of how the myriad o…

SpatialAgent: An autonomous AI agent for spatial biology Open

Hanchen Wang, Yichun He, Paula P. Coelho, Mauro Bucci, Arshad Nazir , et al. · 2025

Advances in AI are transforming scientific discovery, yet spatial biology, a field that deciphers the molecular organization within tissues, remains constrained by labor-intensive workflows. Here, we present SpatialAgent, a fully autonomou…

Author Correction: Multiplexed, image-based pooled screens in primary cells and tissues with PerturbView Open

Takamasa Kudo, Ana M. Meireles, Reuben Moncada, Yushu Chen, Ping Wu , et al. · 2025

Normal breast tissues harbour rare populations of aneuploid epithelial cells Open

Yiyun Lin, Junke Wang, Kaile Wang, Shanshan Bai, Aatish Thennavan , et al. · 2024

Highly multiplexed, image-based pooled screens in primary cells and tissues with PerturbView Open

Takamasa Kudo, Ana M. Meireles, Reuben Moncada, Yushu Chen, Ping Wu , et al. · 2023

Optical pooled screening (OPS) is a highly scalable method for linking image-based phenotypes with cellular perturbations. However, it has thus far been restricted to relatively low-plex phenotypic readouts in cancer cell lines in culture,…

A spatially resolved single-cell genomic atlas of the adult human breast Open

Tapsi Kumar, Kevin Nee, Runmin Wei, Siyuan He, Quy Nguyen , et al. · 2023

A spatially resolved single cell genomic atlas of the adult human breast Open

Tapsi Kumar, Kevin Nee, Runmin Wei, Siyuan He, Quy Nguyen , et al. · 2023

SUMMARY The adult human breast comprises an intricate network of epithelial ducts and lobules that are embedded in connective and adipose tissue. While previous studies have mainly focused on the breast epithelial system, many of the non-e…

Table S2 from Transcriptomics Associates Molecular Features with <sup>18</sup>F-Fluorocholine PET/CT Imaging Phenotype and Its Potential Relationship to Survival in Hepatocellular Carcinoma Open

Sandi A. Kwee, Maarit Tiirikainen, Miles M. Sato, Jared D. Acoba, Runmin Wei , et al. · 2023

GSEA using mSigDB CGP collection

Supplementary Figures S2-S4 from Transcriptomics Associates Molecular Features with <sup>18</sup>F-Fluorocholine PET/CT Imaging Phenotype and Its Potential Relationship to Survival in Hepatocellular Carcinoma Open

Sandi A. Kwee, Maarit Tiirikainen, Miles M. Sato, Jared D. Acoba, Runmin Wei , et al. · 2023

Heat Maps

Tables S3-S8 from Transcriptomics Associates Molecular Features with <sup>18</sup>F-Fluorocholine PET/CT Imaging Phenotype and Its Potential Relationship to Survival in Hepatocellular Carcinoma Open

Sandi A. Kwee, Maarit Tiirikainen, Miles M. Sato, Jared D. Acoba, Runmin Wei , et al. · 2023

Gene set overlap analysis results

Data from Transcriptomics Associates Molecular Features with <sup>18</sup>F-Fluorocholine PET/CT Imaging Phenotype and Its Potential Relationship to Survival in Hepatocellular Carcinoma Open

Sandi A. Kwee, Maarit Tiirikainen, Miles M. Sato, Jared D. Acoba, Runmin Wei , et al. · 2023

Studies involving transcriptomics have revealed multiple molecular subtypes of hepatocellular carcinoma (HCC). Positron emission tomography/computed tomography (PET/CT) has also identified distinct molecular imaging subtypes, including tho…

Supplementary Figures S2-S4 from Transcriptomics Associates Molecular Features with <sup>18</sup>F-Fluorocholine PET/CT Imaging Phenotype and Its Potential Relationship to Survival in Hepatocellular Carcinoma Open

Sandi A. Kwee, Maarit Tiirikainen, Miles M. Sato, Jared D. Acoba, Runmin Wei , et al. · 2023

Heat Maps

Table S1 from Transcriptomics Associates Molecular Features with <sup>18</sup>F-Fluorocholine PET/CT Imaging Phenotype and Its Potential Relationship to Survival in Hepatocellular Carcinoma Open

Sandi A. Kwee, Maarit Tiirikainen, Miles M. Sato, Jared D. Acoba, Runmin Wei , et al. · 2023

Functional Annotation Cluster Results

Tables S3-S8 from Transcriptomics Associates Molecular Features with <sup>18</sup>F-Fluorocholine PET/CT Imaging Phenotype and Its Potential Relationship to Survival in Hepatocellular Carcinoma Open

Sandi A. Kwee, Maarit Tiirikainen, Miles M. Sato, Jared D. Acoba, Runmin Wei , et al. · 2023

Gene set overlap analysis results

Table S1 from Transcriptomics Associates Molecular Features with <sup>18</sup>F-Fluorocholine PET/CT Imaging Phenotype and Its Potential Relationship to Survival in Hepatocellular Carcinoma Open

Sandi A. Kwee, Maarit Tiirikainen, Miles M. Sato, Jared D. Acoba, Runmin Wei , et al. · 2023

Functional Annotation Cluster Results

Data from Transcriptomics Associates Molecular Features with <sup>18</sup>F-Fluorocholine PET/CT Imaging Phenotype and Its Potential Relationship to Survival in Hepatocellular Carcinoma Open

Sandi A. Kwee, Maarit Tiirikainen, Miles M. Sato, Jared D. Acoba, Runmin Wei , et al. · 2023

Studies involving transcriptomics have revealed multiple molecular subtypes of hepatocellular carcinoma (HCC). Positron emission tomography/computed tomography (PET/CT) has also identified distinct molecular imaging subtypes, including tho…

Table S2 from Transcriptomics Associates Molecular Features with <sup>18</sup>F-Fluorocholine PET/CT Imaging Phenotype and Its Potential Relationship to Survival in Hepatocellular Carcinoma Open

Sandi A. Kwee, Maarit Tiirikainen, Miles M. Sato, Jared D. Acoba, Runmin Wei , et al. · 2023

GSEA using mSigDB CGP collection

Supplementary Figure S1 from Transcriptomics Associates Molecular Features with <sup>18</sup>F-Fluorocholine PET/CT Imaging Phenotype and Its Potential Relationship to Survival in Hepatocellular Carcinoma Open

Sandi A. Kwee, Maarit Tiirikainen, Miles M. Sato, Jared D. Acoba, Runmin Wei , et al. · 2023

SUV Ratios (was previously Figure S4, but renumbered to match call out order)

Supplementary Figure S1 from Transcriptomics Associates Molecular Features with <sup>18</sup>F-Fluorocholine PET/CT Imaging Phenotype and Its Potential Relationship to Survival in Hepatocellular Carcinoma Open

Sandi A. Kwee, Maarit Tiirikainen, Miles M. Sato, Jared D. Acoba, Runmin Wei , et al. · 2023

SUV Ratios (was previously Figure S4, but renumbered to match call out order)

Multi-Omic analyses characterize the ceramide/sphingomyelin pathway as a therapeutic target in Alzheimer’s disease Open

Priyanka Baloni, Matthias Arnold, Luna Buitrago, Kwangsik Nho, Herman Moreno , et al. · 2022

Spatial charting of single-cell transcriptomes in tissues Open

Runmin Wei, Siyuan He, Shanshan Bai, Emi Sei, Min Hu , et al. · 2022

Spatial charting of single cell transcriptomes in tissues Open

Runmin Wei, Siyuan He, Shanshan Bai, Emi Sei, Min Hu , et al. · 2021

Single cell RNA sequencing (scRNA-seq) methods can profile the transcriptomes of single cells but cannot preserve spatial information. Conversely, spatial transcriptomics (ST) assays can profile spatial regions in tissue sections, but do n…

Peripheral serum metabolomic profiles inform central cognitive impairment Open

Jingye Wang, Runmin Wei, Guoxiang Xie, Matthias Arnold, Alexandra Kueider‐Paisley , et al. · 2020

Author Correction: Analysis of the Human Protein Atlas Image Classification competition Open

Wei Ouyang, Casper F. Winsnes, Martin Hjelmare, Anthony J. Cesnik, Lovisa Åkesson , et al. · 2020

An amendment to this paper has been published and can be accessed via a link at the top of the paper.

Serum metabolite profiles are associated with the presence of advanced liver fibrosis in Chinese patients with chronic hepatitis B viral infection Open

Guoxiang Xie, Xiaoning Wang, Runmin Wei, Jingye Wang, Aihua Zhao , et al. · 2020

Publisher Correction: Analysis of the Human Protein Atlas Image Classification competition Open

Wei Ouyang, Casper F. Winsnes, Martin Hjelmare, Anthony J. Cesnik, Lovisa Åkesson , et al. · 2020

Serum metabolite profiles are associated with the presence of advanced liver fibrosis in Chinese patients with chronic hepatitis B viral infection Open

Guoxiang Xie, Xiaoning Wang, Runmin Wei, Jingye Wang, Aihua Zhao , et al. · 2020

Background & Aims Accurate and noninvasive diagnosis and staging of liver fibrosis is essential for effective clinical management of chronic liver disease (CLD). We aimed to identify serum metabolite markers that reliably predict the stage…

Publisher Correction: Analysis of the Human Protein Atlas Image Classification competition Open

Wei Ouyang, Casper F. Winsnes, Martin Hjelmare, Anthony J. Cesnik, Lovisa Åkesson , et al. · 2019

Analysis of the Human Protein Atlas Image Classification competition Open

Wei Ouyang, Casper F. Winsnes, Martin Hjelmare, Anthony J. Cesnik, Lovisa Åkesson , et al. · 2019

Pinpointing subcellular protein localizations from microscopy images is easy to the trained eye, but challenging to automate. Based on the Human Protein Atlas image collection, we held a competition to identify deep learning solutions to s…

Peripheral Serum Metabolomic Profiles Inform Antecedent Central Cognitive Impairment in Older Adults Open

Jingye Wang, Runmin Wei, Guoxiang Xie, Matthias Arnold, Gregory Louie , et al. · 2019

The incidence of Alzheimer’s disease (AD) increases with age and is a significant cause of worldwide morbidity and mortality. However, the metabolic perturbations behind the onset of AD remains unclear. In this study, we performed metaboli…

Fetching topic information...