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View article: Canu (v1.5, f356c2c) + 5 x Pilon (v1.22) assemblies (hybrid Illumina and ONT)
Canu (v1.5, f356c2c) + 5 x Pilon (v1.22) assemblies (hybrid Illumina and ONT) Open
Canu assemblies of 12 isolates of Klebsiella pneumoniae, generated with ONT reads, followed by five rounds of Pilon polishing using Illumina reads.
View article: Canu (v1.5, f356c2c) + 1 x Pilon (v1.22) assemblies (hybrid Illumina and ONT)
Canu (v1.5, f356c2c) + 1 x Pilon (v1.22) assemblies (hybrid Illumina and ONT) Open
Canu assemblies of 12 isolates of Klebsiella pneumoniae, generated with ONT reads, followed by one round of Pilon polishing using Illumina reads.
View article: Subsampled ONT reads
Subsampled ONT reads Open
These files contain the ONT reads after subsampling based on length and quality.The full set of basecalled, adapter trimmed and demultiplexed reads (no subsampling) are available in SRA:SRR5665597, SRR5665596, SRR5665591, SRR5665590, SRR56…
View article: Unicycler (v0.4.0) assemblies (Illumina-only)
Unicycler (v0.4.0) assemblies (Illumina-only) Open
Unicycler assemblies of 12 isolates of Klebsiella pneumoniae, generated with Illumina reads.
View article: Canu (v1.5, f356c2c) + Nanopolish (v0.7.0) assemblies (ONT-only)
Canu (v1.5, f356c2c) + Nanopolish (v0.7.0) assemblies (ONT-only) Open
Canu+Nanopolish assemblies of 12 isolates of Klebsiella pneumoniae, generated with ONT reads.
View article: SPAdes (v3.10.1) assemblies (Illumina-only)
SPAdes (v3.10.1) assemblies (Illumina-only) Open
SPAdes assemblies of 12 isolates of Klebsiella pneumoniae, generated with Illumina reads.
View article: Unicycler (v0.4.0) + Nanopolish (v0.7.0) assemblies (ONT-only)
Unicycler (v0.4.0) + Nanopolish (v0.7.0) assemblies (ONT-only) Open
Unicycler+Nanopolish assemblies of 12 isolates of Klebsiella pneumoniae, generated with ONT reads.
View article: Unicycler (v0.4.0) assemblies (ONT-only)
Unicycler (v0.4.0) assemblies (ONT-only) Open
Unicycler assemblies of 12 isolates of Klebsiella pneumoniae, generated with ONT reads.
View article: Raw Illumina reads
Raw Illumina reads Open
These files contain the Illumina reads before trimming with Trim Galore.SRA accessions for these read sets:ERR1023775, ERR1023792, SRR5665579, SRR5665578, ERR1008714, ERR1008775, ERR1023649, ERR1023671, ERR1015321, SRR5665581, SRR5665580, …
View article: Unicycler (v0.4.0) assemblies (hybrid Illumina and ONT)
Unicycler (v0.4.0) assemblies (hybrid Illumina and ONT) Open
Unicycler assemblies of 12 isolates of Klebsiella pneumoniae, generated with both Illumina and ONT reads.
View article: Canu (v1.5, f356c2c) + 3 x Pilon (v1.22) assemblies (hybrid Illumina and ONT)
Canu (v1.5, f356c2c) + 3 x Pilon (v1.22) assemblies (hybrid Illumina and ONT) Open
Canu assemblies of 12 isolates of Klebsiella pneumoniae, generated with ONT reads, followed by three rounds of Pilon polishing using Illumina reads.
View article: Basecalled ONT reads
Basecalled ONT reads Open
These files contain the ONT reads as produced by the Albacore basecaller (before Porechop trimming and demultiplexing).The set of adapter trimmed reads (after Porechop, no subsampling) are available in SRA:SRR5665597, SRR5665596, SRR566559…
View article: Canu (v1.5, f356c2c) + 4 x Pilon (v1.22) assemblies (hybrid Illumina and ONT)
Canu (v1.5, f356c2c) + 4 x Pilon (v1.22) assemblies (hybrid Illumina and ONT) Open
Canu assemblies of 12 isolates of Klebsiella pneumoniae, generated with ONT reads, followed by four rounds of Pilon polishing using Illumina reads.
View article: SPAdes (v3.10.1) assemblies (hybrid Illumina and ONT)
SPAdes (v3.10.1) assemblies (hybrid Illumina and ONT) Open
SPAdes assemblies of 12 isolates of Klebsiella pneumoniae, generated with Illumina and ONT reads.
View article: Canu (v1.5, f356c2c) + 2 x Pilon (v1.22) assemblies (hybrid Illumina and ONT)
Canu (v1.5, f356c2c) + 2 x Pilon (v1.22) assemblies (hybrid Illumina and ONT) Open
Canu assemblies of 12 isolates of Klebsiella pneumoniae, generated with ONT reads, followed by two rounds of Pilon polishing using Illumina reads.
View article: Canu (v1.5, f356c2c) assemblies (ONT-only)
Canu (v1.5, f356c2c) assemblies (ONT-only) Open
Canu assemblies of 12 isolates of Klebsiella pneumoniae, generated with ONT reads.