Sarah Amis
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View article: Differential Trafficking and Expression of PIR Proteins in Acute and Chronic Plasmodium Infections
Differential Trafficking and Expression of PIR Proteins in Acute and Chronic Plasmodium Infections Open
Plasmodium multigene families are thought to play important roles in the pathogenesis of malaria. Plasmodium interspersed repeat (pir) genes comprise the largest multigene family in many Plasmodium species. However, their expression patter…
View article: Analysis of Pir Gene Expression Across the Plasmodium Life Cycle
Analysis of Pir Gene Expression Across the Plasmodium Life Cycle Open
Background Plasmodium interspersed repeat ( pir ) is the largest multigene family in the genomes of most Plasmodium species. A variety of functions for the PIR proteins which they encode have been proposed, including antigenic variation, i…
View article: Additional file 5 of Analysis of pir gene expression across the Plasmodium life cycle
Additional file 5 of Analysis of pir gene expression across the Plasmodium life cycle Open
Additional file 5. P. c. chabaudi counts across the 24 hour asexual developmental cycle.
View article: Additional file 1 of Analysis of pir gene expression across the Plasmodium life cycle
Additional file 1 of Analysis of pir gene expression across the Plasmodium life cycle Open
Additional file 1. Re-analysed counts of the P. berghei data from the studies listed in Table 2.
View article: Additional file 14 of Analysis of pir gene expression across the Plasmodium life cycle
Additional file 14 of Analysis of pir gene expression across the Plasmodium life cycle Open
Additional file 14. Table of contents of additional files 1–6.
View article: Additional file 4 of Analysis of pir gene expression across the Plasmodium life cycle
Additional file 4 of Analysis of pir gene expression across the Plasmodium life cycle Open
Additional file 4. Statistics of P. berghei individual pir genes (DESeq).
View article: Additional file 2 of Analysis of pir gene expression across the Plasmodium life cycle
Additional file 2 of Analysis of pir gene expression across the Plasmodium life cycle Open
Additional file 2. P. berghei pirgene information, TPM values for individual samples and combined across life cycle stages, and summed across sub-families, chromosomes and loci.
View article: Additional file 16 of Analysis of pir gene expression across the Plasmodium life cycle
Additional file 16 of Analysis of pir gene expression across the Plasmodium life cycle Open
Additional file 16: Table S1. The relationship between P. chabaudi RNA-seq samples used in this study and their entries in the ENA is described.
View article: Additional file 6 of Analysis of pir gene expression across the Plasmodium life cycle
Additional file 6 of Analysis of pir gene expression across the Plasmodium life cycle Open
Additional file 6. P.c. chabaudi parasitaemia, pir gene information, TPM values, summed across loci, and z-scores.
View article: Additional file 3 of Analysis of pir gene expression across the Plasmodium life cycle
Additional file 3 of Analysis of pir gene expression across the Plasmodium life cycle Open
Additional file 3. Statistics of P. berghei pirgene set comparisons (QUSage).