Shangzhe Zhang
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View article: Correction: Non-histone lactylation: unveiling its functional significance
Correction: Non-histone lactylation: unveiling its functional significance Open
[This corrects the article DOI: 10.3389/fcell.2025.1535611.].
View article: Genomic signatures of adaptation across a landscape of crickets exposed to an introduced parasitoid
Genomic signatures of adaptation across a landscape of crickets exposed to an introduced parasitoid Open
Novel species interactions provide an opportunity to assess the earliest stages of genetic adaptation in wild populations. We explored the genomic and geographic landscape of adaptation in small, fragmented Hawaiian cricket populations, wh…
View article: Cis-regulatory divergence and mate recognition in behaviourally isolated cricket species
Cis-regulatory divergence and mate recognition in behaviourally isolated cricket species Open
Cis-regulatory evolution has been implicated in morphological and physiological reproductive isolation, but its role in divergence of mate recognition behaviours is unknown. The latter are often the first, most powerful mating barriers to …
View article: A High‐Quality Reference Genome and Comparative Genomics of the Widely Farmed Banded Cricket ( <scp> <i>Gryllodes sigillatus</i> </scp> ) Identifies Selective Breeding Targets
A High‐Quality Reference Genome and Comparative Genomics of the Widely Farmed Banded Cricket ( <span> <i>Gryllodes sigillatus</i> </span> ) Identifies Selective Breeding Targets Open
Farmed insects have gained attention as an alternative, sustainable source of protein with a lower carbon footprint than traditional livestock. We present a high‐quality reference genome for one of the most commonly farmed insects, the ban…
View article: Non-histone lactylation: unveiling its functional significance
Non-histone lactylation: unveiling its functional significance Open
Lactylation, a newly discovered protein posttranslational modification (PTM) in 2019, primarily occurs on lysine residues. Lactylation of histones was initially identified, and subsequent studies have increasingly demonstrated its widespre…
View article: A high-quality reference genome and comparative genomics of the widely-farmed banded cricket (<i>Gryllodes sigillatus</i>) identifies selective breeding targets
A high-quality reference genome and comparative genomics of the widely-farmed banded cricket (<i>Gryllodes sigillatus</i>) identifies selective breeding targets Open
Farmed insects have gained attention as an alternative, sustainable source of protein with a lower carbon footprint than traditional livestock. We present a high-quality reference genome for one of the most commonly farmed insects, the ban…
View article: Competing adaptations maintain nonadaptive variation in a wild cricket population
Competing adaptations maintain nonadaptive variation in a wild cricket population Open
How emerging adaptive variants interact is an important factor in the evolution of wild populations, but the opportunity to empirically study this interaction is rare. We recently documented the emergence of an adaptive phenotype “curly-wi…
View article: Temporal genomics in Hawaiian crickets reveals compensatory intragenomic coadaptation during adaptive evolution
Temporal genomics in Hawaiian crickets reveals compensatory intragenomic coadaptation during adaptive evolution Open
View article: Genomic structural variation is associated with hypoxia adaptation in high-altitude zokors
Genomic structural variation is associated with hypoxia adaptation in high-altitude zokors Open
View article: Competing adaptations maintain non-adaptive variation in a wild cricket population
Competing adaptations maintain non-adaptive variation in a wild cricket population Open
How emerging adaptive variants interact is an important factor in the evolution of wild populations. However, the opportunity to empirically study this interaction is rare. We recently documented the emergence of an adaptive phenotype ‘cur…
View article: Genomic divergence between two sister <i>Ostrya</i> species through linked selection and recombination
Genomic divergence between two sister <i>Ostrya</i> species through linked selection and recombination Open
Studying the evolution of genomic divergence between lineages is a topical issue in evolutionary biology. However, the evolutionary forces that shape the heterogeneous divergence of the genomic landscape are still poorly understood. Here, …
View article: The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms
The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms Open
In October 2021, 59 scientists from 14 countries and 13 U.S. states collaborated virtually in the Third Annual Baylor College of Medicine & DNANexus Structural Variation hackathon. The goal of the hackathon was to advance research on struc…
View article: Genomic insights into zokors’ phylogeny and speciation in China
Genomic insights into zokors’ phylogeny and speciation in China Open
Significance Phylogenies are the basis of many ecological and evolutionary studies. However, zokor phylogeny and speciation patterns are heavily debated. This study disentangled the phylogeny and speciation of zokors genomically. Six speci…
View article: Sympatric speciation of the spiny mouse from Evolution Canyon in Israel substantiated genomically and methylomically
Sympatric speciation of the spiny mouse from Evolution Canyon in Israel substantiated genomically and methylomically Open
Significance Whether sympatric speciation (SS) is rare or common is still debated. Two populations of the spiny mouse, Acomys cahirinus , from Evolution Canyon I (EC I) in Israel have been depicted earlier as speciating sympatrically by mo…
View article: The complete chloroplast genome sequence of <i>Opuntia sulphurea</i> (Cactaceae)
The complete chloroplast genome sequence of <i>Opuntia sulphurea</i> (Cactaceae) Open
Opuntia sulphurea Gillies ex Salm-Dyck 1834 (Cactaceae) acts as an invasive species due to its ability to survive in various environments. In this study, we assembled the complete chloroplast (cp) genome of Opuntia sulphurea,…
View article: An international virtual hackathon to build tools for the analysis of structural variants within species ranging from coronaviruses to vertebrates
An international virtual hackathon to build tools for the analysis of structural variants within species ranging from coronaviruses to vertebrates Open
In October 2020, 62 scientists from nine nations worked together remotely in the Second Baylor College of Medicine & DNAnexus hackathon, focusing on different related topics on Structural Variation, Pan-genomes, and SARS-CoV-2 related rese…
View article: Structural Variants Selected during Yak Domestication Inferred from Long-Read Whole-Genome Sequencing
Structural Variants Selected during Yak Domestication Inferred from Long-Read Whole-Genome Sequencing Open
Structural variants (SVs) represent an important genetic resource for both natural and artificial selection. Here we present a chromosome-scale reference genome for domestic yak (Bos grunniens) that has longer contigs and scaffolds (N50 44…
View article: An international virtual hackathon to build tools for the analysis of structural variants within species ranging from coronaviruses to vertebrates
An international virtual hackathon to build tools for the analysis of structural variants within species ranging from coronaviruses to vertebrates Open
In October 2020, 62 scientists from nine nations worked together remotely in the Second Baylor College of Medicine & DNAnexus hackathon, focusing on different related topics on Structural Variation, Pan-genomes, and SARS-CoV-2 related rese…
View article: Which factors contribute most to genome size variation within angiosperms?
Which factors contribute most to genome size variation within angiosperms? Open
Genome size varies greatly across the flowering plants and has played an important role in shaping their evolution. It has been reported that many factors correlate with the variation in genome size, but few studies have systematically exp…
View article: Supplementary data for Bos grunniens genomic assembly (BosGru3.0) and population structural variation
Supplementary data for Bos grunniens genomic assembly (BosGru3.0) and population structural variation Open
This repository contains annotation file of the BosGru3.0 genome sequence, the data set of population-scale SV results.
View article: Supplementary data for Bos grunniens genomic assembly (BosGru3.0) and population structural variation
Supplementary data for Bos grunniens genomic assembly (BosGru3.0) and population structural variation Open
This repository contains annotation file of the BosGru3.0 genome sequence, the data set of population-scale SV results.
View article: Supplementary data for Bos grunniens genomic assembly (BosGru3.0) and population structural variation
Supplementary data for Bos grunniens genomic assembly (BosGru3.0) and population structural variation Open
This repository contains annotation file of the BosGru3.0 genome sequence, the data set of population-scale SV results.
View article: Genome evolution of blind subterranean mole rats: Adaptive peripatric versus sympatric speciation
Genome evolution of blind subterranean mole rats: Adaptive peripatric versus sympatric speciation Open
Significance We substantiate genomically, repeatomically, and epigenomically the origin, demography, and timing of two divergent speciation models in the Israeli five blind subterranean species of Spalax ehrenbergi superspecies. Four speci…
View article: Evolution and domestication of the Bovini species
Evolution and domestication of the Bovini species Open
Summary Domestication of the Bovini species (taurine cattle, zebu, yak, river buffalo and swamp buffalo) since the early Holocene (ca. 10 000 BCE) has contributed significantly to the development of human civilization. In this study, we re…
View article: Structure-activity relationship and synthetic methodologies of α-santonin derivatives with diverse bioactivities: A mini-review
Structure-activity relationship and synthetic methodologies of α-santonin derivatives with diverse bioactivities: A mini-review Open
View article: Simulation of Rutherford backscattering spectrometry from arbitrary atom structures
Simulation of Rutherford backscattering spectrometry from arbitrary atom structures Open
Rutherford backscattering spectrometry in a channeling direction (RBS/C) is a powerful tool for analysis of the fraction of atoms displaced from their lattice positions. However, it is in many cases not straightforward to analyze what is t…