Shaoqin Shen
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View article: A high-quality chromosome-level reference genome of Pulsatilla chinensis
A high-quality chromosome-level reference genome of Pulsatilla chinensis Open
Pulsatilla chinensis (Bunge) Regel, a medicinal species in the genus Pulsatilla (Ranunculaceae), exhibits significant anti-inflammatory activity due to its abundant triterpenoid saponins, enhancing its medicinal value. All 48 known Pulsati…
View article: Comprehensive genomic analysis and database construction for Apiales
Comprehensive genomic analysis and database construction for Apiales Open
The research project carried out a profound investigation into the genomic evolution and chromosomal karyotypes of Apiales species, unraveling their evolutionary history from a genomic perspective. In addition, this study established the T…
View article: New insights into genome assembly at the chromosome‐level of <i>Prunus tomentosa</i> in evolution and cold tolerance
New insights into genome assembly at the chromosome‐level of <i>Prunus tomentosa</i> in evolution and cold tolerance Open
This study assembled a high-quality chromosome-level genome of Prunus tomentosa, offering a vital resource for elucidating its genetic architecture, evolutionary relationships, and facilitating genome-assisted breeding efforts. Multi-omics…
View article: Genome-Wide Analysis of the NBS-LRR Gene Family and SSR Molecular Markers Development in Solanaceae
Genome-Wide Analysis of the NBS-LRR Gene Family and SSR Molecular Markers Development in Solanaceae Open
The Solanaceae family occupies a significant position, and the study of resistance genes within this family is extremely valuable. Therefore, our goal is to examine disease resistance genes based on the high-quality representative genomes …
View article: SoIR: a comprehensive Solanaceae information resource for comparative and functional genomic study
SoIR: a comprehensive Solanaceae information resource for comparative and functional genomic study Open
The Solanaceae family, which includes economically important crops such as tomatoes, potatoes and peppers, has experienced a rapid expansion in genomic data due to advancements in sequencing technologies. However, existing databases are li…
View article: High-quality reference genome decoding and population evolution analysis of prickly Sechium edule
High-quality reference genome decoding and population evolution analysis of prickly Sechium edule Open
Sechium edule (chayote) is an important vegetable crop belonging to the Cucurbitaceae family. To decipher the chayote genome, a high-quality chromosome-level chayote genome was obtained by genome sequencing and bioinformatic analysis. The …
View article: The high-quality sequencing of the <i>Brassica rapa</i> ‘XiangQingCai’ genome and exploration of genome evolution and genes related to volatile aroma
The high-quality sequencing of the <i>Brassica rapa</i> ‘XiangQingCai’ genome and exploration of genome evolution and genes related to volatile aroma Open
‘Vanilla’ (XQC, brassica variety chinensis) is an important vegetable crop in the Brassica family, named for its strong volatile fragrance. In this study, we report the high-quality chromosome-level genome sequence of XQC. The assembled ge…
View article: Large‐scale analysis of trihelix transcription factors reveals their expansion and evolutionary footprint in plants
Large‐scale analysis of trihelix transcription factors reveals their expansion and evolutionary footprint in plants Open
The trihelix transcription factor ( TTF ) gene family is an important class of transcription factors that play key roles in regulating developmental processes and responding to various stresses. To date, no comprehensive analysis of the TT…
View article: Transcriptomics and Genomics Analysis Uncover the Differentially Expressed Chlorophyll and Carotenoid-Related Genes in Celery
Transcriptomics and Genomics Analysis Uncover the Differentially Expressed Chlorophyll and Carotenoid-Related Genes in Celery Open
Celery (Apium graveolens L.), a plant from Apiaceae, is one of the most important vegetables and is grown worldwide. Carotenoids can capture light energy and transfer it to chlorophyll, which plays a central role in photosynthesis. Here, b…
View article: Polyploidy events shaped the expansion of transcription factors in Cucurbitaceae and exploitation of genes for tendril development
Polyploidy events shaped the expansion of transcription factors in Cucurbitaceae and exploitation of genes for tendril development Open
Cucurbitaceae is one of the most important plant families distributed worldwide. Transcription factors (TFs) regulate plant growth at the transcription level. Here, we performed a systematic analysis of 42 641 TFs from 63 families in 14 Cu…
View article: High‐quality ice plant reference genome analysis provides insights into genome evolution and allows exploration of genes involved in the transition from <scp>C3</scp> to <scp>CAM</scp> pathways
High‐quality ice plant reference genome analysis provides insights into genome evolution and allows exploration of genes involved in the transition from <span>C3</span> to <span>CAM</span> pathways Open
Summary Ice plant ( Mesembryanthemum crystallinum ), a member of the Aizoaceae family, is a typical halophyte crop and a model plant for studying the mechanism of transition from C3 photosynthesis to crassulacean acid metabolism (CAM). Her…
View article: Chromosome‐level pepino genome provides insights into genome evolution and anthocyanin biosynthesis in Solanaceae
Chromosome‐level pepino genome provides insights into genome evolution and anthocyanin biosynthesis in Solanaceae Open
SUMMARY Pepino ( Solanum muricatum , 2 n = 2 x = 24), a member of the Solanaceae family, is an important globally grown fruit. Herein, we report high‐quality, chromosome‐level pepino genomes. The 91.67% genome sequence is anchored to 12 ch…
View article: Large-scale analyses of heat shock transcription factors and database construction based on whole-genome genes in horticultural and representative plants
Large-scale analyses of heat shock transcription factors and database construction based on whole-genome genes in horticultural and representative plants Open
Heat shock transcription factor (Hsf) plays a critical role in regulating heat resistance. Here, 2950 Hsf family genes were identified from 111 horticultural and representative plants. More Hsf genes were detected in higher plants than in …