Shaoting Li
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View article: Machine learning-based analysis of the impact of 5′ untranslated region on protein expression
Machine learning-based analysis of the impact of 5′ untranslated region on protein expression Open
The 5′ untranslated region (5′UTR) plays a crucial regulatory role in messenger RNA (mRNA), with modified 5′UTRs extensively utilized in vaccine production, gene therapy, etc. Nevertheless, manually optimizing 5′UTRs may encounter difficul…
View article: Does food availability affect nutrition-related health among rural residents in China?
Does food availability affect nutrition-related health among rural residents in China? Open
View article: The effect of food environment on nutrition-related health: evidence from rural China
The effect of food environment on nutrition-related health: evidence from rural China Open
Background Understanding the impact of the food environment on nutrition-related health is essential for addressing the rising prevalence of issues such as overweight and obesity amid rapidly changing dietary patterns in many emerging econ…
View article: Antimicrobial efficacy of linalool and cinnamaldehyde against Salmonella Infantis: Synergistic and antagonistic interactions with food components
Antimicrobial efficacy of linalool and cinnamaldehyde against Salmonella Infantis: Synergistic and antagonistic interactions with food components Open
View article: Characterization of a novel lytic phage vB_AbaM_AB4P2 encoding depolymerase and its application in eliminating biofilms formed by Acinetobacter baumannii
Characterization of a novel lytic phage vB_AbaM_AB4P2 encoding depolymerase and its application in eliminating biofilms formed by Acinetobacter baumannii Open
Not applicable.
View article: <i>Salmonella</i> serotypes in the genomic era: simplified <i>Salmonella</i> serotype interpretation from DNA sequence data
<i>Salmonella</i> serotypes in the genomic era: simplified <i>Salmonella</i> serotype interpretation from DNA sequence data Open
In the era of genomic characterization of strains for public health microbiology, whole genome sequencing (WGS)-enabled subtyping of Salmonella provides superior discrimination of strains compared to traditional methods such as serotyping.…
View article: Design and Assessment of 3-DOF Nano-Gimbal for Spatial Manipulation
Design and Assessment of 3-DOF Nano-Gimbal for Spatial Manipulation Open
View article: Genomic characterization of Salmonella isolated from retail chicken and humans with diarrhea in Qingdao, China
Genomic characterization of Salmonella isolated from retail chicken and humans with diarrhea in Qingdao, China Open
Salmonella , especially antimicrobial resistant strains, remains one of the leading causes of foodborne bacterial disease. Retail chicken is a major source of human salmonellosis. Here, we investigated the prevalence, antimicrobial resista…
View article: The impact of demographic dynamics on food consumption and its environmental outcomes: Evidence from China
The impact of demographic dynamics on food consumption and its environmental outcomes: Evidence from China Open
With increasing population and changing demographics, food consumption has experienced a significant transition in quantity and quality. However, a dearth of knowledge remains regarding its environmental impacts and how it responds to demo…
View article: Prevalence and transmission risk of colistin and multidrug resistance in long-distance coastal aquaculture
Prevalence and transmission risk of colistin and multidrug resistance in long-distance coastal aquaculture Open
Due to the wide use of antibiotics, intensive aquaculture farms have been recognized as a significant reservoir of antibiotic resistomes. Although the prevalence of colistin resistance genes and multidrug-resistant bacteria (MDRB) has been…
View article: Comparative genomics unveils extensive genomic variation between populations of <i>Listeria</i> species in natural and food-associated environments
Comparative genomics unveils extensive genomic variation between populations of <i>Listeria</i> species in natural and food-associated environments Open
Comprehending bacterial genomic variation linked to distinct environments can yield novel insights into mechanisms underlying differential adaptation and transmission of microbes across environments. Gaining such insights is particularly c…
View article: Metabolomics-based response of Salmonella to desiccation stress and skimmed milk powder storage
Metabolomics-based response of Salmonella to desiccation stress and skimmed milk powder storage Open
The strong survival ability of Salmonella in low-moisture foods (LMFs) has been of public concern, and is considered a threat to people’s health. Recently, the development of omics technology has promoted research on the molecular mechanis…
View article: Towards Sustainable Land Use: A New Assessment for Cultivated Land Use Eco-Efficiency and its Influencing Factors in China
Towards Sustainable Land Use: A New Assessment for Cultivated Land Use Eco-Efficiency and its Influencing Factors in China Open
View article: Does Information and Communication Technology Benefit the Mental Health of the Elderly? - Empirical Evidence from the China Health and Retirement Longitudinal Study
Does Information and Communication Technology Benefit the Mental Health of the Elderly? - Empirical Evidence from the China Health and Retirement Longitudinal Study Open
View article: Draft Genome Sequences of Antibiotic-Resistant <i>Serratia</i> sp. Strains Isolated from Raw Sewage and Sediment Sludge in Georgia, USA
Draft Genome Sequences of Antibiotic-Resistant <i>Serratia</i> sp. Strains Isolated from Raw Sewage and Sediment Sludge in Georgia, USA Open
Sewage has been established as a prime matrix for monitoring the emergence and dissemination of etiologic agents and antibiotic resistance determinants in a population. Here, we report the draft genomes and the acquired resistance genes of…
View article: Integrative Assessment of Reduced Listeria monocytogenes Susceptibility to Benzalkonium Chloride in Produce Processing Environments
Integrative Assessment of Reduced Listeria monocytogenes Susceptibility to Benzalkonium Chloride in Produce Processing Environments Open
Our study demonstrates an integrative approach to improve food safety assessment and control strategies in food processing environments through the collective leveraging of genomic surveys, laboratory assays, and processing facility sampli…
View article: Draft Genome Sequences of Multidrug-Resistant Escherichia coli Isolated from River Water
Draft Genome Sequences of Multidrug-Resistant Escherichia coli Isolated from River Water Open
The spread of antibiotic resistance poses a critical challenge worldwide. Contaminated environments can become reservoirs, spreading antibiotic-resistant bacteria and genetic determinants of resistance to humans directly or indirectly. Her…
View article: Subtyping Evaluation of <i>Salmonella</i> Enteritidis Using Single Nucleotide Polymorphism and Core Genome Multilocus Sequence Typing with Nanopore Reads
Subtyping Evaluation of <i>Salmonella</i> Enteritidis Using Single Nucleotide Polymorphism and Core Genome Multilocus Sequence Typing with Nanopore Reads Open
Evaluation, standardization, and implementation of the ONT approach to WGS-based, strain-level subtyping is challenging, in part due to its relatively high base-calling error rates and frequent iterations of sequencing chemistry and bioinf…
View article: Subtyping evaluation of <i>Salmonella</i> Enteritidis using SNP and core genome MLST with nanopore reads
Subtyping evaluation of <i>Salmonella</i> Enteritidis using SNP and core genome MLST with nanopore reads Open
Whole genome sequencing (WGS) for public health surveillance and epidemiological investigation of foodborne pathogens predominantly relies on sequencing platforms that generate short reads. Continuous improvement of long-read nanopore sequ…
View article: Salmonella enterica Serovar Typhimurium Isolates from Wild Birds in the United States Represent Distinct Lineages Defined by Bird Type
Salmonella enterica Serovar Typhimurium Isolates from Wild Birds in the United States Represent Distinct Lineages Defined by Bird Type Open
Within-host evolution of S. Typhimurium may lead to pathovars adapted to specific hosts.
View article: First report of the mobile colistin resistance gene mcr-9.1 in Morganella morganii isolated from sewage in Georgia, USA
First report of the mobile colistin resistance gene mcr-9.1 in Morganella morganii isolated from sewage in Georgia, USA Open
View article: <i>Salmonella enterica</i> serovar Typhimurium from Wild Birds in the United States Represent Distinct Lineages Defined by Bird Type
<i>Salmonella enterica</i> serovar Typhimurium from Wild Birds in the United States Represent Distinct Lineages Defined by Bird Type Open
Salmonella enterica serovar Typhimurium is typically considered a host generalist, however certain strains are associated with specific hosts and show genetic features of host adaptation. Here, we sequenced 131 S. Typhimurium strains from …
View article: Global spread of Salmonella Enteritidis via centralized sourcing and international trade of poultry breeding stocks
Global spread of Salmonella Enteritidis via centralized sourcing and international trade of poultry breeding stocks Open
View article: Draft Genome Sequences of Colistin-Resistant and <i>mcr-1.1-</i> Carrying Escherichia coli Strains Isolated from Irrigation Water
Draft Genome Sequences of Colistin-Resistant and <i>mcr-1.1-</i> Carrying Escherichia coli Strains Isolated from Irrigation Water Open
Colistin has been classified as a highest priority clinically important antibiotic. However, the emergence of mobile colistin resistance ( mcr ) genes has threatened the therapeutic uses of colistin. Here, we report the draft genome sequen…
View article: Draft genome sequences and resistome analysis of multidrug-resistant mcr-1-harbouring Escherichia coli isolated from pre-harvest poultry in Lebanon
Draft genome sequences and resistome analysis of multidrug-resistant mcr-1-harbouring Escherichia coli isolated from pre-harvest poultry in Lebanon Open
View article: Evaluation of nanopore sequencing technology to identify Salmonella enterica Choleraesuis var. Kunzendorf and Orion var. 15+, 34+
Evaluation of nanopore sequencing technology to identify Salmonella enterica Choleraesuis var. Kunzendorf and Orion var. 15+, 34+ Open
Our previous study demonstrated that whole genome sequencing (WGS) data generated by Oxford Nanopore Technologies (ONT) can be used for rapid and accurate prediction of selected Salmonella serotypes. However, one limitation is that establi…
View article: Evaluation of Salmonella Serotype Prediction With Multiplex Nanopore Sequencing
Evaluation of Salmonella Serotype Prediction With Multiplex Nanopore Sequencing Open
The use of whole genome sequencing (WGS) data generated by the long-read sequencing platform Oxford Nanopore Technologies (ONT) has been shown to provide reliable results for Salmonella serotype prediction in a previous study. To further m…
View article: Emergence of the Mobile Colistin Resistance Gene <i>mcr-1</i> in Multidrug-Resistant Escherichia coli Isolated from the Fecal Matter of Toddlers in a Community
Emergence of the Mobile Colistin Resistance Gene <i>mcr-1</i> in Multidrug-Resistant Escherichia coli Isolated from the Fecal Matter of Toddlers in a Community Open
Colistin is one of the few first-line options for treating complicated infections with certain multidrug-resistant bacteria (1).….
View article: Draft Genome Sequences of Multidrug-Resistant and <i>mcr-1.1</i> -Harboring Escherichia coli Isolated from Drinking and Well Waters Used in Syrian Refugee Camps
Draft Genome Sequences of Multidrug-Resistant and <i>mcr-1.1</i> -Harboring Escherichia coli Isolated from Drinking and Well Waters Used in Syrian Refugee Camps Open
Resistance to colistin, a last-resort antibiotic, threatens the treatment of complicated infections, especially in susceptible populations such as Syrian refugees who live in makeshift camps. Two multidrug-resistant Escherichia coli strain…
View article: Whole-Genome Sequencing Analysis of Salmonella Enterica Serotype Enteritidis Isolated from Poultry Sources in South Korea, 2010–2017
Whole-Genome Sequencing Analysis of Salmonella Enterica Serotype Enteritidis Isolated from Poultry Sources in South Korea, 2010–2017 Open
Salmonella enterica subsp. enterica serotype Enteritidis (SE) is recognized as a major cause of human salmonellosis worldwide, and most human salmonellosis is due to the consumption of contaminated poultry meats and poultry byproducts. Who…