Shaun Arevalo YOU? Author Swipe

Last 10y

Comparison of Plasma Metagenomic Next-generation Sequencing and PCR Methods for Epstein–Barr Virus Viral Load Monitoring in Nasopharyngeal Carcinoma Open

Harish N. Vasudevan, Ann A. Lazar, Kevin Reyes, Dezhi Rong, Shaun Arevalo , et al. · 2024

Plasma mNGS is a distinct method for EBV titer measurement in NPC patients and more broadly, is a promising method for non-invasive monitoring of disease status for infection-associated malignancies.

Detection of Neoplasms by Metagenomic Next-Generation Sequencing of Cerebrospinal Fluid Open

Wei Gu, Andreas M. Rauschecker, Elaine Hsu, Kelsey C. Zorn, Yasemin Sucu , et al. · 2021

This case-control study showed that CSF mNGS, which has low specimen volume requirements, does not require the preservation of cell integrity, and was orginally developed to diagnose neurologic infections, can also detect genetic evidence …

Detection of cryptogenic malignancies from metagenomic whole genome sequencing of body fluids Open

Wei Gu, Eric Talevich, Elaine Hsu, Zhongxia Qi, Anatoly Urisman , et al. · 2021

Detection of Neoplasms by Metagenomic Sequencing of Cerebrospinal Fluid Open

Wei Gu, Andreas M. Rauschecker, Elaine Hsu, Kelsey C. Zorn, Yasemin Sucu , et al. · 2021

Importance Malignant neoplasms of the central nervous system (CNS) are frequently not detected by cerebrospinal fluid (CSF) flow cytometry or cytology, and clinical phenotypes can overlap with inflammatory meningoencephalitis. Objective To…

Detection of Cryptogenic Malignancies from Metagenomic Whole Genome Sequencing of Body Fluids Open

Wei Gu, Eric Talevich, Elaine Hsu, Zhongxia Qi, Anatoly Urisman , et al. · 2021

Detection of Cryptogenic Malignancies from Metagenomic Whole Genome Sequencing of Body Fluids Wei Gu^1,2,3,4*, Eric Talevich⁵, Elaine Hsu¹, Zhongxia Qi¹, Anatoly Urisman⁶

Detection of Neoplasms by Metagenomic Sequencing of Cerebrospinal Fluid Open

Wei Gu, Andreas M. Rauschecker, Elaine Hsu, Kelsey C. Zorn, Yasemin Sucu , et al. · 2021

Detection of Neoplasms by Metagenomic Sequencing of Cerebrospinal Fluid Wei Gu, MD, PhD^1,2*, Andreas M. Rauschecker, MD, PhD³, Elaine Hsu, BS¹, Kelsey C. Zorn, BS⁴, Yasemin Sucu, BS¹, …

Detection of Neoplasms by Metagenomic Sequencing of Cerebrospinal Fluid Open

Wei Gu, Andreas M. Rauschecker, Elaine Hsu, Kelsey C. Zorn, Yasemin Sucu , et al. · 2021

Detection of Neoplasms by Metagenomic Sequencing of Cerebrospinal Fluid Wei Gu^1,2*, Andreas M. Rauschecker³, Elaine Hsu¹, Kelsey C. Zorn⁴, Yasemin Sucu¹, Scot Federman¹, All…

Detection of Neoplasms by Metagenomic Sequencing of Cerebrospinal Fluid Open

Wei Gu, Andreas M. Rauschecker, Elaine Hsu, Kelsey C. Zorn, Yasemin Sucu , et al. · 2021

Detection of Neoplasms by Metagenomic Sequencing of Cerebrospinal Fluid Wei Gu, MD, PhD^1,2*, Andreas M. Rauschecker, MD, PhD³, Elaine Hsu, BS¹, Kelsey C. Zorn, BS⁴, Yasemin Sucu, BS¹, …

Additional file 2 of Detection of cryptogenic malignancies from metagenomic whole genome sequencing of body fluids Open

Wei Gu, Eric Talevich, Elaine Hsu, Zhongxia Qi, Anatoly Urisman , et al. · 2021

Additional file 2: Table S1. Body fluid samples from patients positive for malignancy by cytology and/or flow cytometry.

Additional file 3 of Detection of cryptogenic malignancies from metagenomic whole genome sequencing of body fluids Open

Wei Gu, Eric Talevich, Elaine Hsu, Zhongxia Qi, Anatoly Urisman , et al. · 2021

Additional file 3: Table S2. Select microbiological cases that have overlapping features with cancer presentations.

Additional file 4 of Detection of cryptogenic malignancies from metagenomic whole genome sequencing of body fluids Open

Wei Gu, Eric Talevich, Elaine Hsu, Zhongxia Qi, Anatoly Urisman , et al. · 2021

Additional file 4: Table S3. Microbiological cases - all other cases.

Additional file 5 of Detection of cryptogenic malignancies from metagenomic whole genome sequencing of body fluids Open

Wei Gu, Eric Talevich, Elaine Hsu, Zhongxia Qi, Anatoly Urisman , et al. · 2021

Additional file 5: Table S4. Verification cohort.

Rapid pathogen detection by metagenomic next-generation sequencing of infected body fluids Open

Wei Gu, Xianding Deng, Marco Lee, Yasemin Sucu, Shaun Arevalo , et al. · 2020

Rapid deployment of SARS-CoV-2 testing: The CLIAHUB Open

Emily Crawford, Irene Acosta, Vida Ahyong, Erika C. Anderson, Shaun Arevalo , et al. · 2020

Author(s): Crawford, Emily D; Acosta, Irene; Ahyong, Vida; Anderson, Erika C; Arevalo, Shaun; Asarnow, Daniel; Axelrod, Shannon; Ayscue, Patrick; Azimi, Camillia S; Azumaya, Caleigh M; Bachl, Stefanie; Bachmutsky, Iris; Bhaduri, Aparna; Br…

Direct Comparison of SARS-CoV-2 Analytical Limits of Detection across Seven Molecular Assays Open

Becky Fung, Allan Gopez, Venice Servellita, Shaun Arevalo, Coral Ho , et al. · 2020

Analytical sensitivity for SARS-CoV-2 detection is a key performance metric for the evaluation of viral detection assays. We determined analytical limits of detection for seven SARS-CoV-2 assays using serial dilutions of pooled patient mat…

Author Correction: Metagenomic sequencing with spiked primer enrichment for viral diagnostics and genomic surveillance Open

Xianding Deng, Asmeeta Achari, Scot Federman, Guixia Yu, Sneha Somasekar , et al. · 2020

Metagenomic sequencing with spiked primer enrichment for viral diagnostics and genomic surveillance Open

Xianding Deng, Asmeeta Achari, Scot Federman, Guixia Yu, Sneha Somasekar , et al. · 2020

LB14. Cerebrospinal Fluid Profiling of the Human Host Response Reveals Species-Specific Enterovirus Biosignatures in Acute Flaccid Myelitis Cases Open

Benjamin Briggs, Yale Santos, Akshaya Ramesh, Manfred Grabherr, Asmeeta Achari , et al. · 2019

Background Since 2014 there have been global biennial outbreaks of acute flaccid myelitis (AFM), a rare but severe “polio-like” illness of as yet-unknown etiology primarily affecting children. Enteroviruses (EVs),, especially EV-D68 and EV…

Clinical Metagenomic Sequencing for Diagnosis of Meningitis and Encephalitis Open

Michael R. Wilson, Hannah A. Sample, Kelsey C. Zorn, Shaun Arevalo, Guixia Yu , et al. · 2019

Routine microbiologic testing is often insufficient to detect all neuroinvasive pathogens. In this study, metagenomic NGS of CSF obtained from patients with meningitis or encephalitis improved diagnosis of neurologic infections and provide…

Laboratory validation of a clinical metagenomic sequencing assay for pathogen detection in cerebrospinal fluid Open

Steve Miller, Samia N. Naccache, Erik Samayoa, Kevin Messacar, Shaun Arevalo , et al. · 2019

Metagenomic next-generation sequencing (mNGS) for pan-pathogen detection has been successfully tested in proof-of-concept case studies in patients with acute illness of unknown etiology but to date has been largely confined to research set…

Laboratory Validation of a Clinical Metagenomic Sequencing Assay for Pathogen Detection in Cerebrospinal Fluid Open

Steve Miller, SN Naccache, Erik Samayoa, Kevin Messacar, Shaun Arevalo , et al. · 2018

Metagenomic next-generation sequencing (mNGS) for pan-pathogen detection has been successfully tested in proof-of-concept case studies in patients with acute illness of unknown etiology, but to date has been largely confined to research se…

Diagnosis of Fatal Human Case of St. Louis Encephalitis Virus Infection by Metagenomic Sequencing, California, 2016 Open

Charles Y. Chiu, Lark L. Coffey, Jamie A. Murkey, Kelly Symmes, Hannah A. Sample , et al. · 2017

We used unbiased metagenomic next-generation sequencing to diagnose a fatal case of meningoencephalitis caused by St. Louis encephalitis virus in a patient from California in September 2016. This case is associated with the recent 2015-201…