Explanipedia

Correction: Design of an observational multi-country cohort study to assess immunogenicity of multiple vaccine platforms (InVITE) Open

Irini Sereti, Kathryn Shaw‐Saliba, Lori E. Dodd, Robin Dewar, Sylvain Laverdure , et al. · 2024

[This corrects the article DOI: 10.1371/journal.pone.0273914.].

Author Correction: brainlife.io: a decentralized and open-source cloud platform to support neuroscience research Open

Soichi Hayashi, Bradley Caron, Anibal Sólon Heinsfeld, Sophia Vinci‐Booher, Brent McPherson , et al. · 2024

brainlife.io: a decentralized and open-source cloud platform to support neuroscience research Open

Soichi Hayashi, Bradley Caron, Anibal Sólon Heinsfeld, Sophia Vinci‐Booher, Brent McPherson , et al. · 2024

SARS-CoV-2 seroprevalence in vaccine-naïve participants from the Democratic Republic of Congo, Guinea, Liberia, and Mali Open

Sylvain Laverdure, Donatien Kazadi, Kadidia Kone, Viviane Callier, Djénéba Dabitao , et al. · 2024

Open Data Governance at the Canadian Open Neuroscience Platform (CONP): From the Walled Garden to the Arboretum Open

Alexander Bernier, Bartha Maria Knoppers, Patrick Bermudez, Michael J. S. Beauvais, Adrian Thorogood , et al. · 2024

Scientific research communities pursue dual imperatives in implementing strategies to share their data. These communities attempt to maximize the accessibility of biomedical data for downstream research use, in furtherance of open science …

Creating a Discipline-specific Commons for Infectious Disease Epidemiology Open

Michael M. Wagner, William R. Hogan, John Levander, Adam Darr, Matt Diller , et al. · 2023

Objective: To create a commons for infectious disease (ID) epidemiology in which epidemiologists, public health officers, data producers, and software developers can not only share data and software, but receive assistance in improving the…

SynthEco - A multi-layered digital ecosystem for analysing complex human behaviour in context Open

Antonia Gieschen, Catherine Paquet, Raja Sengupta, Anna‐Liisa Aunio, Fares Belkhiria , et al. · 2023

Introduction & BackgroundHuman behaviour is multi-faceted and complex, with different dimensions interacting and impacting each other and individuals operating in an environmental context. In order to understand this behaviour better, the …

Data and Tools Integration in the Canadian Open Neuroscience Platform Open

Jean‐Baptiste Poline, Samir Das, Tristan Glatard, Cécile Madjar, Erin W. Dickie , et al. · 2023

Design of an observational multi-country cohort study to assess immunogenicity of multiple vaccine platforms (InVITE) Open

Irini Sereti, Kathryn Shaw‐Saliba, Lori E. Dodd, Robin Dewar, Sylvain Laverdure , et al. · 2022

In response to the COVID-19 pandemic, COVID-19 vaccines have been developed, and the World Health Oraganization (WHO) has granted emergency use listing to multiple vaccines. Studies of vaccine immunogenicity data from implementing COVID-19…

From Precision Medicine to Precision Convergence for Multilevel Resilience—The Aging Brain and Its Social Isolation Open

Laurette Dubé, Patrícia Pelufo Silveira, Daiva E. Nielsen, Spencer Moore, Catherine Paquet , et al. · 2022

OPINION article Front. Public Health, 05 July 2022Sec. Aging and Public Health https://doi.org/10.3389/fpubh.2022.720117

AI-Driven Agent-Based Models to Study the Role of Vaccine Acceptance in Controlling COVID-19 Spread in the US Open

Parantapa Bhattacharya, Dustin Machi, Jiangzhuo Chen, Stefan Hoops, Bryan Lewis , et al. · 2021

We study the role of vaccine acceptance in controlling the spread of COVID-19 in the US using AI-driven agent-based models. Our study uses a 288 million node social contact network spanning all 50 US states plus Washington DC, comprised of…

Bridges-2: A Platform for Rapidly-Evolving and Data Intensive Research Open

Shawn T. Brown, Paola A. Buitrago, Edward Hanna, S. Sanielevici, Robin Scibek , et al. · 2021

Today’s landscape of computational science is evolving rapidly, with a need for new, flexible, and responsive supercomputing platforms for addressing the growing areas of artificial intelligence (AI), data analytics (DA) and convergent col…

The Cuban Human Brain Mapping Project, a young and middle age population-based EEG, MRI, and cognition dataset Open

Pedro A. Valdés‐Sosa, Lídice Galán‐Garcia, Jorge Bosch‐Bayard, María L. Bringas-Vega, Eduardo Aubert-Vázquez , et al. · 2021

Understanding the impact of preprocessing pipelines on neuroimaging cortical surface analyses Open

Nikhil Bhagwat, Amadou Barry, Erin W. Dickie, Shawn T. Brown, Gabriel A. Devenyi , et al. · 2021

Background The choice of preprocessing pipeline introduces variability in neuroimaging analyses that affects the reproducibility of scientific findings. Features derived from structural and functional MRI data are sensitive to the algorith…

How Long-Term Acute Care Hospitals Can Play an Important Role in Controlling Carbapenem-Resistant Enterobacteriaceae in a Region: A Simulation Modeling Study Open

Bruce Y. Lee, Sarah M. Bartsch, Michael Y. Lin, Lindsey Asti, Joel Welling , et al. · 2020

Typically, long-term acute care hospitals (LTACHs) have less experience in and incentives to implementing aggressive infection control for drug-resistant organisms such as carbapenem-resistant Enterobacteriaceae (CRE) than acute care hospi…

A Quantitative EEG Toolbox for the MNI Neuroinformatics Ecosystem: Normative SPM of EEG Source Spectra Open

Jorge Bosch‐Bayard, Eduardo Aubert-Vázquez, Shawn T. Brown, Christine Rogers, Gregory Kiar , et al. · 2020

The Tomographic Quantitative Electroencephalography (qEEGt) toolbox is integrated with the Montreal Neurological Institute (MNI) Neuroinformatics Ecosystem as a docker into the Canadian Brain Imaging Research Platform (CBRAIN). qEEGt produ…

Deploying large fixed file datasets with SquashFS and Singularity Open

Pierre Rioux, Gregory Kiar, A. Hutton, Alan C. Evans, Shawn T. Brown · 2020

Shared high-performance computing (HPC) platforms, such as those provided by XSEDE and Compute Canada, enable researchers to carry out large-scale computational experiments at a fraction of the cost of the cloud. Most systems require the u…

The Cuban Human Brain Mapping Project population based normative EEG, MRI, and Cognition dataset Open

Pedro A. Valdés‐Sosa, Lı́dice Galán, Jorge Bosch‐Bayard, María L. Bringas-Vega, Eduardo Aubert Vázquez , et al. · 2020

The Cuban Human Brain Mapping Project (CHBMP) repository is an open multimodal neuroimaging and cognitive dataset from 282 healthy participants (31.9 ± 9.3 years, age range 18–68 years). This dataset was acquired from 2004 to 2008 as a sub…

Understanding the impact of preprocessing pipelines on neuroimaging cortical surface analyses Open

Nikhil Bhagwat, Amadou Barry, Erin W. Dickie, Shawn T. Brown, Gabriel A. Devenyi , et al. · 2020

The choice of preprocessing pipeline introduces variability in neuroimaging analyses that affects the reproducibility of scientific findings. Features derived from structural and functional MR imaging data are sensitive to the algorithmic …

Comparing perturbation models for evaluating stability of neuroimaging pipelines Open

Gregory Kiar, Pablo de Castro, Pierre Rioux, Eric Petit, Shawn T. Brown , et al. · 2020

With an increase in awareness regarding a troubling lack of reproducibility in analytical software tools, the degree of validity in scientific derivatives and their downstream results has become unclear. The nature of reproducibility issue…

Geospatial Planning and the Resulting Economic Impact of Human Papillomavirus Vaccine Introduction in Mozambique Open

Leila A. Haidari, Shawn T. Brown, Dagna Constenla, Eli Zenkov, Marie C. Ferguson , et al. · 2020

Research has shown that the distance to the nearest immunization location can ultimately prevent someone from getting immunized. With the introduction of human papillomavirus (HPV) vaccine throughout the world, a major question is whether …

How to Choose Target Facilities in a Region to Implement Carbapenem-resistant Enterobacteriaceae Control Measures Open

Bruce Y. Lee, Sarah M. Bartsch, Mary K. Hayden, Joel Welling, Leslie E. Mueller , et al. · 2020

Background When trying to control regional spread of antibiotic-resistant pathogens such as carbapenem-resistant Enterobacteriaceae (CRE), decision makers must choose the highest-yield facilities to target for interventions. The question i…

Performance benefits of Intel(R) OptaneTM DC persistent memory for the\n parallel processing of large neuroimaging data Open

Valérie Hayot‐Sasson, Shawn T. Brown, Tristan Glatard · 2019

Open-access neuroimaging datasets have reached petabyte scale, and continue\nto grow. The ability to leverage the entirety of these datasets is limited to a\nrestricted number of labs with both the capacity and infrastructure to process\nt…

Performance benefits of Intel(R) OptaneTM DC persistent memory for the parallel processing of large neuroimaging data Open

Valérie Hayot‐Sasson, Shawn T. Brown, Tristan Glatard · 2019

Open-access neuroimaging datasets have reached petabyte scale, and continue to grow. The ability to leverage the entirety of these datasets is limited to a restricted number of labs with both the capacity and infrastructure to process the …

How coping can hide larger systems problems: the routine immunisation supply chain in Bihar, India Open

Bruce Y. Lee, Patrick T. Wedlock, Elizabeth Mitgang, Sarah N. Cox, Leila A. Haidari , et al. · 2019

Introduction Coping occurs when health system personnel must make additional, often undocumented efforts to compensate for existing system and management deficiencies. While such efforts may be done with good intentions, few studies evalua…

Comparing Perturbation Models for Evaluating Stability of Post-Processing Pipelines in Neuroimaging. Open

Gregory Kiar, Pablo de Castro, Pierre Rioux, Eric Petit, Shawn T. Brown , et al. · 2019

A lack of software reproducibility has become increasingly apparent in the last several years, calling into question the validity of scientific findings affected by published tools. Reproducibility issues may have numerous sources of error…

Comparing Perturbation Models for Evaluating Stability of Neuroimaging\n Pipelines Open

Gregory Kiar, Pablo Castro, Pierre Rioux, Éric Petit, Shawn T. Brown , et al. · 2019

A lack of software reproducibility has become increasingly apparent in the\nlast several years, calling into question the validity of scientific findings\naffected by published tools. Reproducibility issues may have numerous sources\nof er…

CBRAIN Tutorial #1 Image Files Open

Shawn T. Brown · 2019

These are files that can be used for the CBRAIN Tutorial at https://github.com/aces/cbrain/wiki/Tutorial-%231:-Getting-Started-with-CBRAIN.

CBRAIN Tutorial #1 Image Files Open

Shawn T. Brown · 2019

These are files that can be used for the CBRAIN Tutorial at https://github.com/aces/cbrain/wiki/Tutorial-%231:-Getting-Started-with-CBRAIN.

EGS Collab Project: Status, Tests, and Data Open

Timothy J. Kneafsey, Patrick Dobson, Jonathan Ajo‐Franklin, Yves Guglielmi, C. A. Valladao , et al. · 2019

Copyright 2019 ARMA, American Rock Mechanics Association. The EGS (Enhanced Geothermal Systems) Collab project is performing stimulation and flow experiments in highly-monitored and well-characterized intermediate-scale (approximately10 to…

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