Shayle B. Matsuda
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View article: Minimally Invasive Coral Biopsy Technique for In-Situ Microbiome and Metabolome Sampling v1
Minimally Invasive Coral Biopsy Technique for In-Situ Microbiome and Metabolome Sampling v1 Open
Climate change and predicted future ocean conditions are threatening coral reefs on a global scale with compositional shifts at the macro and microscopic scale. One way to assess reef health is through studying the coral microbiome and met…
View article: Intergenerational metabolomic signatures of bleaching resistance in corals
Intergenerational metabolomic signatures of bleaching resistance in corals Open
Coral bleaching is one of the greatest threats to the persistence of tropical reef ecosystems. This necessitates identification of attributes associated with coral resistance and resilience to thermal stress, both within and between genera…
View article: Heat-tolerant algal symbionts may prevent extirpation of the threatened elkhorn coral, Acropora palmata, in Florida during intensifying marine heatwaves
Heat-tolerant algal symbionts may prevent extirpation of the threatened elkhorn coral, Acropora palmata, in Florida during intensifying marine heatwaves Open
The elkhorn coral, Acropora palmata , was historically a major reef-building species in the Caribbean, but has suffered devastating declines in recent decades. Despite significant restoration efforts in Florida, the marine heatwave of 2023…
View article: Queen conch aquaculture remains a conservation symbol and is not yet a fisheries solution
Queen conch aquaculture remains a conservation symbol and is not yet a fisheries solution Open
Conservation aquaculture, defined as cultivating aquatic organisms to manage or replenish natural populations, has been advocated as a strategy to enhance fisheries production and help restore declining populations. Culture is especially c…
View article: Transgenerational metabolomic signatures of bleaching resistance in corals
Transgenerational metabolomic signatures of bleaching resistance in corals Open
Coral bleaching is one of the greatest climate-driven threats to the persistence of tropical reef ecosystems. This necessitates the identification of attributes associated with coral resistance and resilience to thermal stress both within …
View article: Running a queer- and trans-inclusive microbiology faculty search
Running a queer- and trans-inclusive microbiology faculty search Open
Queer and transgender scientists face documented systemic challenges across the sciences, and as a result have a higher attrition rate than their peers. Recent calls for change within microbiology have emphasized the importance of addressi…
View article: Single-polyp metabolomics reveals biochemical structuring of the coral holobiont at multiple scales
Single-polyp metabolomics reveals biochemical structuring of the coral holobiont at multiple scales Open
View article: Building a Queer- and Trans-Inclusive Microbiology Conference
Building a Queer- and Trans-Inclusive Microbiology Conference Open
Microbiology conferences can be powerful places to build collaborations and exchange scientific thought, but for queer and transgender (trans) scientists they can also become sources of alienation and isolation. Many conference organizers …
View article: Centering Transgender and Gender Non-Conforming Experience, Access, & Safety in Ecological Fieldwork
Centering Transgender and Gender Non-Conforming Experience, Access, & Safety in Ecological Fieldwork Open
Synopsis Efforts to make ecological sciences more diverse, equitable, and inclusive require us to identify who is being left out and take action to rectify harmful situations. Recruitment of trainees from underrepresented groups alone is i…
View article: Temperature‐mediated acquisition of rare heterologous symbionts promotes survival of coral larvae under ocean warming
Temperature‐mediated acquisition of rare heterologous symbionts promotes survival of coral larvae under ocean warming Open
Reef‐building corals form nutritional symbioses with endosymbiotic dinoflagellates (Symbiodiniaceae), a relationship that facilitates the ecological success of coral reefs. These symbionts are mostly acquired anew each generation from the …
View article: Limited Progress in Improving Gender and Geographic Representation in Coral Reef Science
Limited Progress in Improving Gender and Geographic Representation in Coral Reef Science Open
Despite increasing recognition of the need for more diverse and equitable representation in the sciences, it is unclear whether measurable progress has been made. Here, we examine trends in authorship in coral reef science from 1,677 artic…
View article: Molecular Commerce on Coral Reefs: Using Metabolomics to Reveal Biochemical Exchanges Underlying Holobiont Biology and the Ecology of Coastal Ecosystems
Molecular Commerce on Coral Reefs: Using Metabolomics to Reveal Biochemical Exchanges Underlying Holobiont Biology and the Ecology of Coastal Ecosystems Open
The rapidly advancing field of metabolomics encompasses a diverse suite of powerful analytical and bioinformatic tools that can help to reveal the diversity and activity of chemical compounds in individual organisms, species interactions, …
View article: Coral Resilience Lab StepOnePlus™qPCR protocol for Cladocopium and DurusdiniumSymbiodiniaceae detection v2
Coral Resilience Lab StepOnePlus™qPCR protocol for Cladocopium and DurusdiniumSymbiodiniaceae detection v2 Open
The purpose of this protocol is to quantify Cladocopium and Durusdinium Symbiodiniaceae cell ratio densities (symbiont to host cell ratios) from individual coral DNA samples using the StepOnePlus™ Real-Time PCR System. It allows for a quic…
View article: A Field Primer for Monitoring Benthic Ecosystems using Structure-from-Motion Photogrammetry
A Field Primer for Monitoring Benthic Ecosystems using Structure-from-Motion Photogrammetry Open
Structure-from-motion (SfM) photogrammetry is a technique used to generate three-dimensional (3D) reconstructions from a sequence of two-dimensional (2D) images. SfM methods are becoming increasingly popular as a noninvasive way to monitor…
View article: Bleaching resistant corals retain heat tolerance following acclimatization to environmentally distinct reefs
Bleaching resistant corals retain heat tolerance following acclimatization to environmentally distinct reefs Open
Urgent action is needed to prevent the demise of coral reefs as the climate crisis leads to an increasingly warmer and more acidic ocean. Propagating climate change resistant corals to restore degraded reefs is one promising strategy; howe…
View article: Coral Bleaching Susceptibility Is Predictive of Subsequent Mortality Within but Not Between Coral Species
Coral Bleaching Susceptibility Is Predictive of Subsequent Mortality Within but Not Between Coral Species Open
Marine heat waves instigated by anthropogenic climate change are causing increasingly frequent and severe coral bleaching events that often lead to widespread coral mortality. While community-wide increases in coral mortality following ble…
View article: Gates lab qPCR protocol for Cladocopium and DurusdiniumSymbiodiniaceae detection v1
Gates lab qPCR protocol for Cladocopium and DurusdiniumSymbiodiniaceae detection v1 Open
The purpose of this protocol is to quantify Cladocopium and Durusdinium Symbiodiniaceae cell ratio densities (symbiont to host cell ratios) from individual coral DNA samples using the StepOnePlus™ Real-Time PCR System. It allows for a quic…
View article: Science Communication Demands a Critical Approach That Centers Inclusion, Equity, and Intersectionality
Science Communication Demands a Critical Approach That Centers Inclusion, Equity, and Intersectionality Open
We live in an era of abundant scientific information, yet access to information and to opportunities for substantive public engagement with the processes and outcomes of science are still inequitably distributed. Even with increasing inter…
View article: Coral bleaching susceptibility is predictive of subsequent mortality within but not between coral species
Coral bleaching susceptibility is predictive of subsequent mortality within but not between coral species Open
Marine heat waves instigated by anthropogenic climate change are causing increasingly frequent and severe coral bleaching events that often lead to widespread coral mortality. While community-wide increases in coral mortality following ble…
View article: FIGURE 12. Scanning electron micrographs. A–E in Glossing over cryptic species: Descriptions of four new species of Glossodoris and three new species of Doriprismatica (Nudibranchia: Chromodorididae)
FIGURE 12. Scanning electron micrographs. A–E in Glossing over cryptic species: Descriptions of four new species of Glossodoris and three new species of Doriprismatica (Nudibranchia: Chromodorididae) Open
FIGURE 12. Scanning electron micrographs. A–E. Doriprismatica balut sp. nov., CASIZ-186095 Philippines: A. Rachis. B. Mid-laterals. C. Outer laterals. D. Radula ribbon. E. Jaws.
View article: FIGURE 2. Mantle margins. A in Glossing over cryptic species: Descriptions of four new species of Glossodoris and three new species of Doriprismatica (Nudibranchia: Chromodorididae)
FIGURE 2. Mantle margins. A in Glossing over cryptic species: Descriptions of four new species of Glossodoris and three new species of Doriprismatica (Nudibranchia: Chromodorididae) Open
FIGURE 2. Mantle margins. A. Glossodoris buko sp. nov., CASIZ-222107. B. Glossodoris pallida (Cuvier, 1804), CASIZ- 175554. C. Glossodoris bowanga sp. nov., CASIZ-194204, photo by Marina Poddubetskaia. D. Glossodoris andersonae sp. nov., C…
View article: Glossing over cryptic species: Descriptions of four new species of Glossodoris and three new species of Doriprismatica (Nudibranchia: Chromodorididae)
Glossing over cryptic species: Descriptions of four new species of Glossodoris and three new species of Doriprismatica (Nudibranchia: Chromodorididae) Open
Advances in molecular systematics have led to a rapid increase in the identification of cryptic and pseudocryptic species in organisms exhibiting diverse and complex coloration with complicated taxonomic histories. A recent molecular phylo…
View article: Glossing over cryptic species: Descriptions of four new species of Glossodoris and three new species of Doriprismatica (Nudibranchia: Chromodorididae)
Glossing over cryptic species: Descriptions of four new species of Glossodoris and three new species of Doriprismatica (Nudibranchia: Chromodorididae) Open
This dataset contains the digitized treatments in Plazi based on the original journal article Matsuda, Shayle B., Gosliner, Terrence M. (2018): Glossing over cryptic species: Descriptions of four new species of Glossodoris and three new sp…