Shichen Wang
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View article: The roles of elasticity and dimension in liquid-gel phase separation
The roles of elasticity and dimension in liquid-gel phase separation Open
We compare six elastic models for polymer networks in the context of phase separation within a gel, including a new model that combines the finite extensible Arruda-Boyce model and the slip tube model for entangled chains. We study incompr…
View article: Thermodynamics of microphase separation in a swollen, strain-stiffening polymer network
Thermodynamics of microphase separation in a swollen, strain-stiffening polymer network Open
Elastic MicroPhase Separation (EMPS) provides a simple route to create soft materials with homogeneous microstructures by leveraging the supersaturation of crosslinked polymer networks with liquids. At low supersaturation, network elastici…
View article: Mitigating methane emissions and carbon footprint in rice-wheat rotation system by straw centralized returning under rainfed conditions
Mitigating methane emissions and carbon footprint in rice-wheat rotation system by straw centralized returning under rainfed conditions Open
Direct incorporation of straw into the flooded paddy has been widely confirmed to induce substantial methane (CH4) emissions. Exploring innovative modes of straw return and associated field water management is necessary to mitigate CH4 emi…
View article: Mapping QTL for Yield and Its Component Traits Using Wheat (Triticum aestivum L.) RIL Mapping Population from TAM 113 × Gallagher
Mapping QTL for Yield and Its Component Traits Using Wheat (Triticum aestivum L.) RIL Mapping Population from TAM 113 × Gallagher Open
Understanding genetic architectures of yield and yield-related traits of wheat (Triticum aestivum L.) grown under dryland or irrigated conditions is pivotal for developing modern high-yielding germplasm and cultivars. The objectives of thi…
View article: LightGBM-Integrated PV Power Prediction Based on Multi-Resolution Similarity
LightGBM-Integrated PV Power Prediction Based on Multi-Resolution Similarity Open
Improving the accuracy of PV power prediction is conducive to PV participation in economic dispatch and power market transactions in the distribution network, as well as safe dispatch and operation of the grid. Considering that the selecti…
View article: QTL mapping of yield components and kernel traits in wheat cultivars TAM 112 and Duster
QTL mapping of yield components and kernel traits in wheat cultivars TAM 112 and Duster Open
In the Southern Great Plains, wheat cultivars have been selected for a combination of outstanding yield and drought tolerance as a long-term breeding goal. To understand the underlying genetic mechanisms, this study aimed to dissect the qu…
View article: Dissection of Race 1 Anthracnose Resistance in a Watermelon (Citrullus lanatus var. lanatus) Biparental Mapping Population
Dissection of Race 1 Anthracnose Resistance in a Watermelon (Citrullus lanatus var. lanatus) Biparental Mapping Population Open
Anthracnose, caused by the fungal pathogen Colletotrichum orbiculare (Berk. & Mont.) Arx syn. lagenaria, is one of the most important diseases of watermelon in the United States and worldwide. The study was conducted to identify C. orbicul…
View article: Reference-Guided De Novo Genome Assembly to Dissect a QTL Region for Submergence Tolerance Derived from Ciherang-Sub1
Reference-Guided De Novo Genome Assembly to Dissect a QTL Region for Submergence Tolerance Derived from Ciherang-Sub1 Open
Global climate change has increased the number of severe flooding events that affect agriculture, including rice production in the U.S. and internationally. Heavy rainfall can cause rice plants to be completely submerged, which can signifi…
View article: Peer Review #1 of "Genome-wide QTL mapping of yield and agronomic traits in two widely adapted winter wheat cultivars from multiple mega-environments (v0.1)"
Peer Review #1 of "Genome-wide QTL mapping of yield and agronomic traits in two widely adapted winter wheat cultivars from multiple mega-environments (v0.1)" Open
Quantitative trait loci (QTL) analysis could help to identify suitable molecular markers for marker-assisted breeding (MAB).A mapping population of 124 F 5:7 recombinant inbred lines derived from the cross 'TAM 112'/'TAM 111' was grown und…
View article: Genome-wide QTL mapping of yield and agronomic traits in two widely adapted winter wheat cultivars from multiple mega-environments
Genome-wide QTL mapping of yield and agronomic traits in two widely adapted winter wheat cultivars from multiple mega-environments Open
Quantitative trait loci (QTL) analysis could help to identify suitable molecular markers for marker-assisted breeding (MAB). A mapping population of 124 F 5:7 recombinant inbred lines derived from the cross ‘TAM 112’/‘TAM 111’ was grown un…
View article: A New Strategy for Using Historical Imbalanced Yield Data to Conduct Genome-Wide Association Studies and Develop Genomic Prediction Models for Wheat Breeding
A New Strategy for Using Historical Imbalanced Yield Data to Conduct Genome-Wide Association Studies and Develop Genomic Prediction Models for Wheat Breeding Open
Using imbalanced historical yield data to predict performance and select new lines is an arduous breeding task. Genome-wide association studies (GWAS) and high throughput genotyping based on sequencing techniques can increase prediction ac…
View article: A New Strategy for Using Historical Imbalanced Yield Data to Conduct Genome-Wide Association Studies and Develop Genomic Prediction Models for Wheat Breeding
A New Strategy for Using Historical Imbalanced Yield Data to Conduct Genome-Wide Association Studies and Develop Genomic Prediction Models for Wheat Breeding Open
Using imbalanced historical yield data to predict performance and select new lines is an arduous breeding task. An association mapping panel of 227 Texas elite (TXE) wheat breeding lines was used for GWAS and a training population to devel…
View article: Genome wide identification of QTL associated with yield and yield components in two popular wheat cultivars TAM 111 and TAM 112
Genome wide identification of QTL associated with yield and yield components in two popular wheat cultivars TAM 111 and TAM 112 Open
Two drought-tolerant wheat cultivars, ‘TAM 111’ and ‘TAM 112’, have been widely grown in the Southern Great Plains of the U.S. and used as parents in many wheat breeding programs worldwide. This study aimed to reveal genetic control of yie…
View article: High-Density SNP-Based Association Mapping of Seed Traits in Fenugreek Reveals Homology with Clover
High-Density SNP-Based Association Mapping of Seed Traits in Fenugreek Reveals Homology with Clover Open
Fenugreek as a self-pollinated plant is ideal for genome-wide association mapping where traits can be marked by their association with natural mutations. However, fenugreek is poorly investigated at the genomic level due to the lack of inf…
View article: Genome wide identification of QTL associated with yield and yield components in two popular wheat cultivars TAM 111 and TAM 112
Genome wide identification of QTL associated with yield and yield components in two popular wheat cultivars TAM 111 and TAM 112 Open
Two drought-tolerant wheat cultivars, ‘TAM 111’ and ‘TAM 112’, have been widely grown in the Southern Great Plains of the U.S. and used as parents in many wheat breeding programs worldwide. This study aimed to reveal genetic control of yie…
View article: The genetic architecture of genome‐wide recombination rate variation in allopolyploid wheat revealed by nested association mapping
The genetic architecture of genome‐wide recombination rate variation in allopolyploid wheat revealed by nested association mapping Open
Summary Recombination affects the fate of alleles in populations by imposing constraints on the reshuffling of genetic information. Understanding the genetic basis of these constraints is critical for manipulating the recombination process…
View article: Mapping QTLs for Leafspot Resistance in Peanut Using SNP-Based Next-Generation Sequencing Markers
Mapping QTLs for Leafspot Resistance in Peanut Using SNP-Based Next-Generation Sequencing Markers Open
Other SectionsAbstractINTRODUCTIONMATERIALS AND METHODSRESULTSDISCUSSIONACKNOWLEDGEMENTSFigureTableReference
View article: Additional file 4: Table S4. of Genome-wide identification of soybean microRNA responsive to soybean cyst nematodes infection by deep sequencing
Additional file 4: Table S4. of Genome-wide identification of soybean microRNA responsive to soybean cyst nematodes infection by deep sequencing Open
Target prediction of DE gma-miRNAs identified. A table of all predicted targets of DE miRNAs using psRNATarget online. (XLSX 46Â kb)
View article: Additional file 3: of Divergent and convergent modes of interaction between wheat and Puccinia graminis f. sp. tritici isolates revealed by the comparative gene co-expression network and genome analyses
Additional file 3: of Divergent and convergent modes of interaction between wheat and Puccinia graminis f. sp. tritici isolates revealed by the comparative gene co-expression network and genome analyses Open
File contains the list of novel Pgt genes and their PFAM annotation. Table S4. PFAM domains identified in the novel genes discovered in the MCCFC and RKQQC genomes. (XLSX 144Â kb)
View article: Additional file 3: Table S3. of Genome-wide identification of soybean microRNA responsive to soybean cyst nematodes infection by deep sequencing
Additional file 3: Table S3. of Genome-wide identification of soybean microRNA responsive to soybean cyst nematodes infection by deep sequencing Open
Novel miRNA prediction. A table of new miRNAs predicted by miRDeep2 with a score of one or greater. (XLSX 21Â kb)
View article: Additional file 2: Table S2. of Genome-wide identification of soybean microRNA responsive to soybean cyst nematodes infection by deep sequencing
Additional file 2: Table S2. of Genome-wide identification of soybean microRNA responsive to soybean cyst nematodes infection by deep sequencing Open
Significantly Differentially expressed miRNAs identified in SCN-infected soybean roots compared with control. A table of all DE miRNAs identified from each treatment. The q-value was used to consider for statistical significance, with log2…
View article: Additional file 2: of Divergent and convergent modes of interaction between wheat and Puccinia graminis f. sp. tritici isolates revealed by the comparative gene co-expression network and genome analyses
Additional file 2: of Divergent and convergent modes of interaction between wheat and Puccinia graminis f. sp. tritici isolates revealed by the comparative gene co-expression network and genome analyses Open
File contains table with expression values and genomic conservation status for effectors. Table S2. Combined expression and genomic conservation data for all effector candidates from the SCCL gene models. (XLSX 3942Â kb)
View article: Additional file 5: of Divergent and convergent modes of interaction between wheat and Puccinia graminis f. sp. tritici isolates revealed by the comparative gene co-expression network and genome analyses
Additional file 5: of Divergent and convergent modes of interaction between wheat and Puccinia graminis f. sp. tritici isolates revealed by the comparative gene co-expression network and genome analyses Open
The file contains the estimates of Pearson correlation coefficients obtained for each gene or groups of genes from the same GO terms using the inter-isloate comparison of expression profiles. Table S7. Pearson correlation coefficients esti…
View article: Additional file 7: of Divergent and convergent modes of interaction between wheat and Puccinia graminis f. sp. tritici isolates revealed by the comparative gene co-expression network and genome analyses
Additional file 7: of Divergent and convergent modes of interaction between wheat and Puccinia graminis f. sp. tritici isolates revealed by the comparative gene co-expression network and genome analyses Open
The file contains edges of GCNs developed or RKQQC and MCCFC datasets. Table S18. Edges of RKQQC-specific GCN. Table S19. Edges of MCCFC-specific GCN. (XLSX 914Â kb)
View article: Additional file 6: of Divergent and convergent modes of interaction between wheat and Puccinia graminis f. sp. tritici isolates revealed by the comparative gene co-expression network and genome analyses
Additional file 6: of Divergent and convergent modes of interaction between wheat and Puccinia graminis f. sp. tritici isolates revealed by the comparative gene co-expression network and genome analyses Open
File contain the results of k-means clustering and GO term enrichment analyses. Table S11. K-mean clustering of Pgt and wheat genes. Table S12. GO term enrichment for clusters generated using wheat genes expressed in the leaves inoculated …
View article: Additional file 1: Table S1. of Genome-wide identification of soybean microRNA responsive to soybean cyst nematodes infection by deep sequencing
Additional file 1: Table S1. of Genome-wide identification of soybean microRNA responsive to soybean cyst nematodes infection by deep sequencing Open
Total known miRNAs identified in Glycines max from all small RNA-seq libraries. The value was the mean of three replicates for each treatment and normalized as CPM. (XLSX 51Â kb)