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A novel ensemble ARIMA‐LSTM approach for evaluating COVID‐19 cases and future outbreak preparedness Open

Somit Jain, Shobhit Agrawal, Eshaan Mohapatra, Kathiravan Srinivasan · 2024

Background The global impact of the highly contagious COVID‐19 virus has created unprecedented challenges, significantly impacting public health and economies worldwide. This research article conducts a time series analysis of COVID‐19 dat…

An Effective Exponential Ratio and Product Type Estimator in Post-Stratification Open

Bharath Srinivasaiah, Shobhit Agrawal · 2024

In this paper we present a unique estimator for the population parameter under post-stratification. By segmenting the population into homogeneous subgroups, post-stratification is a widely used strategy in survey sampling that increases th…

Harnessing Quantum Cryptography and Artificial Intelligence for Next - Gen Payment Security: A Comprehensive Analysis of Threats and Countermeasures in Distributed Ledger Environments Open

Shobhit Agrawal · 2024

In the contemporary digital era, secure payment systems are imperative for ensuring trust and reliability in financial transactions. Traditional cryptographic methods, once considered robust, face formidable challenges with the advent of q…

Community effort to unravel the complex human neuronal landscape exemplified for the striatum Open

Joachim L. Schultze, Shobhit Agrawal, Rebekka Scholz, Celia Hartmann, Leon Hetzel , et al. · 2024

Precise determination of cellular identity and molecular phenotypes through advanced high-throughput technologies is crucial for understanding intricate tissue functions, especially in complex organs like the brain. Given the complexity of…

Systemic alterations in neutrophils and their precursors in early-stage chronic obstructive pulmonary disease Open

Theodore S. Kapellos, Kevin Baßler, Wataru Fujii, Christina Nalkurthi, Anna C. Schaar , et al. · 2023

Systemic inflammation is established as part of late-stage severe lung disease, but molecular, functional, and phenotypic changes in peripheral immune cells in early disease stages remain ill defined. Chronic obstructive pulmonary disease …

hCoCena: horizontal integration and analysis of transcriptomics datasets Open

Marie Oestreich, Lisa Holsten, Shobhit Agrawal, K. Dahm, Philipp Koch , et al. · 2022

Motivation Transcriptome-based gene co-expression analysis has become a standard procedure for structured and contextualized understanding and comparison of different conditions and phenotypes. Since large study designs with a broad variet…

Disease severity-specific neutrophil signatures in blood transcriptomes stratify COVID-19 patients Open

Anna C. Aschenbrenner, Maria Mouktaroudi, Benjamin Krämer, Marie Oestreich, Nikolaos Antonakos , et al. · 2021

Additional file 1 of Disease severity-specific neutrophil signatures in blood transcriptomes stratify COVID-19 patients Open

Anna C. Aschenbrenner, Maria Mouktaroudi, Benjamin Krämer, Marie Oestreich, Nikolaos Antonakos , et al. · 2021

Additional file 1: Table S1. Cohort statistics.

Additional file 3 of Disease severity-specific neutrophil signatures in blood transcriptomes stratify COVID-19 patients Open

Anna C. Aschenbrenner, Maria Mouktaroudi, Benjamin Krämer, Marie Oestreich, Nikolaos Antonakos , et al. · 2021

Additional file 3: Table S2. Differential genes.

Additional file 8 of Disease severity-specific neutrophil signatures in blood transcriptomes stratify COVID-19 patients Open

Anna C. Aschenbrenner, Maria Mouktaroudi, Benjamin Krämer, Marie Oestreich, Nikolaos Antonakos , et al. · 2021

Additional file 8: Table S7. Drugs overview.

Additional file 4 of Disease severity-specific neutrophil signatures in blood transcriptomes stratify COVID-19 patients Open

Anna C. Aschenbrenner, Maria Mouktaroudi, Benjamin Krämer, Marie Oestreich, Nikolaos Antonakos , et al. · 2021

Additional file 4: Table S3. CoCena modules.

Additional file 9 of Disease severity-specific neutrophil signatures in blood transcriptomes stratify COVID-19 patients Open

Anna C. Aschenbrenner, Maria Mouktaroudi, Benjamin Krämer, Marie Oestreich, Nikolaos Antonakos , et al. · 2021

Additional file 9: Table S8. Differential genes of groups G1-G6.

Additional file 10 of Disease severity-specific neutrophil signatures in blood transcriptomes stratify COVID-19 patients Open

Anna C. Aschenbrenner, Maria Mouktaroudi, Benjamin Krämer, Marie Oestreich, Nikolaos Antonakos , et al. · 2021

Additional file 10: Table S9. Predicted drugs.

Additional file 5 of Disease severity-specific neutrophil signatures in blood transcriptomes stratify COVID-19 patients Open

Anna C. Aschenbrenner, Maria Mouktaroudi, Benjamin Krämer, Marie Oestreich, Nikolaos Antonakos , et al. · 2021

Additional file 5: Table S4. Granulocytes anno, differential genes and neutrophil subtypes.

Additional file 6 of Disease severity-specific neutrophil signatures in blood transcriptomes stratify COVID-19 patients Open

Anna C. Aschenbrenner, Maria Mouktaroudi, Benjamin Krämer, Marie Oestreich, Nikolaos Antonakos , et al. · 2021

Additional file 6: Table S5. Overview of datasets.

Additional file 7 of Disease severity-specific neutrophil signatures in blood transcriptomes stratify COVID-19 patients Open

Anna C. Aschenbrenner, Maria Mouktaroudi, Benjamin Krämer, Marie Oestreich, Nikolaos Antonakos , et al. · 2021

Additional file 7: Table S6. Immune cell type signatures.

Disease severity-specific neutrophil signatures in blood transcriptomes stratify COVID-19 patients Open

Anna C. Aschenbrenner, Maria Mouktaroudi, Benjamin Krämer, Nikolaos Antonakos, Marie Oestreich , et al. · 2020

SUMMARY The SARS-CoV-2 pandemic is currently leading to increasing numbers of COVID-19 patients all over the world. Clinical presentations range from asymptomatic, mild respiratory tract infection, to severe cases with acute respiratory di…

Scaling Genomics Data Processing with Memory-Driven Computing to Accelerate Computational Biology Open

Matthias Becker, Umesh Worlikar, Shobhit Agrawal, Hartmut Schultze, Thomas Ulas , et al. · 2020

Association of coral algal symbionts with a diverse viral community responsive to heat shock Open

Jan D. Brüwer, Shobhit Agrawal, Yi Jin Liew, Manuel Aranda, Christian R. Voolstra · 2017

Engineering Strategies to Decode and Enhance the Genomes of Coral Symbionts Open

Rachel A. Levin, Christian R. Voolstra, Shobhit Agrawal, Peter D. Steinberg, David J. Suggett , et al. · 2017

Elevated sea surface temperatures from a severe and prolonged El Niño event (2014-2016) fueled by climate change have resulted in mass coral bleaching (loss of dinoflagellate photosymbionts, Symbiodinium spp., from coral tissues) and subse…

Additional file 2: Table S1. of Association of coral algal symbionts with a diverse viral community responsive to heat shock Open

Jan Brüwer, Shobhit Agrawal, Yi Jin Liew, Manuel Aranda, Christian R. Voolstra · 2017

Taxonomic diversity of viral classified sequences. Paired reads were classified with CLARK. Shown are CSS-normalized counts over viral taxa for each replicate of four experimental conditions: control, cold shock (“16C”), heat shock (“36C”)…

Additional file 3: Table S2. of Association of coral algal symbionts with a diverse viral community responsive to heat shock Open

Jan Brüwer, Shobhit Agrawal, Yi Jin Liew, Manuel Aranda, Christian R. Voolstra · 2017

Viral gene expression in Transcripts Per Million (TPM). TPM values for all contigs with viral genes (n = 4856) for each replicate of four experimental conditions: control, cold shock (“16C”), heat shock (“36C”), and dark shock (“DS”). (XLS…

Discrete phenotypes are not underpinned by genome-wide genetic differentiation in the squat lobster Munida gregaria (Crustacea: Decapoda: Munididae): a multi-marker study covering the Patagonian shelf Open

Chen Wang, Shobhit Agrawal, Jürgen Laudien, Verena Häussermann, Christoph Held · 2016

Phylogeography of social polymorphism in a boreo-montane ant Open

Jürgen Trettin, Shobhit Agrawal, Jürgen Heınze · 2016

Our study shows a lack of reproductive isolation between the two social forms in SW-Europe. This in turn suggests that demographic and spatial patterns in genetic variation as well as the distribution of social phenotypes are better explai…

Comparative genomics explains the evolutionary success of reef-forming corals Open

Debashish Bhattacharya, Shobhit Agrawal, Manuel Aranda, Sebastian Baumgarten, Mahdi Belcaid , et al. · 2016

Transcriptome and genome data from twenty stony coral species and a selection of reference bilaterians were studied to elucidate coral evolutionary history. We identified genes that encode the proteins responsible for the precipitation and…

Author response: Comparative genomics explains the evolutionary success of reef-forming corals Open

Debashish Bhattacharya, Shobhit Agrawal, Manuel Aranda, Sebastian Baumgarten, Mahdi Belcaid , et al. · 2016

Full text Figures and data Side by side Abstract eLife digest Introduction Results Discussion Materials and methods Data availability References Decision letter Author response Article and author information Metrics Abstract Transcriptome …

Additional file 8: of Discrete phenotypes are not underpinned by genome-wide genetic differentiation in the squat lobster Munida gregaria (Crustacea: Decapoda: Munididae): a multi-marker study covering the Patagonian shelf Open

Chen Wang, Shobhit Agrawal, JĂźrgen Laudien, Verena Häussermann, Christoph Held · 2016

Data S2. Microsatellite data file for each ecotype under three major sampling areas. (TXT 17Â kb)

Additional file 7: of Discrete phenotypes are not underpinned by genome-wide genetic differentiation in the squat lobster Munida gregaria (Crustacea: Decapoda: Munididae): a multi-marker study covering the Patagonian shelf Open

Chen Wang, Shobhit Agrawal, JĂźrgen Laudien, Verena Häussermann, Christoph Held · 2016

Data S1. Cytochrome c oxidase subunit I (COI) sequence alignment file. (NEXUS 59Â kb)

Additional file 1: of Phylogeography of social polymorphism in a boreo-montane ant Open

JĂźrgen Trettin, Shobhit Agrawal, JĂźrgen Heinze · 2016

Additional materials and methods. (DOC 44 kb)

Additional file 2: of Phylogeography of social polymorphism in a boreo-montane ant Open

JĂźrgen Trettin, Shobhit Agrawal, JĂźrgen Heinze · 2016

Additional data (including GenBank accession numbers for sequence data). (DOC 795 kb)

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