Shyam Solanki
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View article: Influence of plant genotype on nodule microbiome composition and function in seasonal yellow pea varieties
Influence of plant genotype on nodule microbiome composition and function in seasonal yellow pea varieties Open
Background and Aims: Legume root nodules host symbiotic rhizobia essential for nitrogen fixation but also harbor diverse non-rhizobial taxa that remain poorly characterized. Yellow pea (Pisum sativum) cultivars adapted to distinct seasonal…
View article: First Report of <i>Xanthomonas prunicola</i> causing Leaf Streak Disease on Wheat (<i>Triticum aestivum</i>) in the United States
First Report of <i>Xanthomonas prunicola</i> causing Leaf Streak Disease on Wheat (<i>Triticum aestivum</i>) in the United States Open
Wheat (Triticum aestivum) suffers an average annual yield loss of 21.5% due to pests and diseases (Savary et al. 2019). Among these, bacterial leaf streak (BLS) has emerged as a serious concern, resulting in an estimated $78.5 million in l…
View article: Two triggers, no oocytes: a rare case of genuine empty follicle syndrome overcome by dual trigger protocol
Two triggers, no oocytes: a rare case of genuine empty follicle syndrome overcome by dual trigger protocol Open
View article: Musculoskeletal Involvement and Persistent Spleen - Regional Variation and Underexplored Risk Factors in Sickle Cell Disease: 2 Case Reports
Musculoskeletal Involvement and Persistent Spleen - Regional Variation and Underexplored Risk Factors in Sickle Cell Disease: 2 Case Reports Open
Painful bony crises and avascular necrosis (AVN) of the femur is commonly described as musculoskeletal involvement in sickle cell disease (SCD). We are presenting two cases of SCD, having diffused, disseminated, and varied musculoskeletal …
View article: <scp><i>BUZZ</i></scp>: an essential gene for postinitiation root hair growth and a mediator of root architecture in <i>Brachypodium distachyon</i>
<span><i>BUZZ</i></span>: an essential gene for postinitiation root hair growth and a mediator of root architecture in <i>Brachypodium distachyon</i> Open
Summary Here, we discover a player in root development. Recovered from a forward‐genetic screen in Brachypodium distachyon , the buzz mutant initiates root hairs but they fail to elongate. In addition, buzz roots grow twice as fast as wild…
View article: Unraveling the genomic reorganization of polygalacturonase-inhibiting proteins in chickpea
Unraveling the genomic reorganization of polygalacturonase-inhibiting proteins in chickpea Open
Polygalacturonase-inhibiting proteins (PGIPs) are cell wall proteins that inhibit pathogen polygalacturonases (PGs). PGIPs, like other defense-related proteins, contain extracellular leucine-rich repeats (eLRRs), which are required for pat…
View article: Identification of two novel polygalacturonase-inhibiting proteins (PGIPs) and their genomic reorganization in chickpea (<i>Cicer arietinum</i>)
Identification of two novel polygalacturonase-inhibiting proteins (PGIPs) and their genomic reorganization in chickpea (<i>Cicer arietinum</i>) Open
Polygalacturonase inhibiting proteins (PGIPs) are cell wall-anchored proteins that inhibit pathogen polygalacturonases (PGs). PGIPs, like other resistance genes, contain extracytoplasmic leucine-rich repeats (eLRRs), which are required for…
View article: Mutations in a barley cytochrome P450 gene enhances pathogen induced programmed cell death and cutin layer instability
Mutations in a barley cytochrome P450 gene enhances pathogen induced programmed cell death and cutin layer instability Open
Disease lesion mimic mutants (DLMMs) are characterized by the spontaneous development of necrotic spots with various phenotypes designated as necrotic ( nec ) mutants in barley. The nec mutants were traditionally considered to have aberran…
View article: Author response: Vision, challenges and opportunities for a Plant Cell Atlas
Author response: Vision, challenges and opportunities for a Plant Cell Atlas Open
View article: Genome-Wide Association Mapping for Yield and Related Traits Under Drought Stressed and Non-stressed Environments in Wheat
Genome-Wide Association Mapping for Yield and Related Traits Under Drought Stressed and Non-stressed Environments in Wheat Open
Understanding the genetics of drought tolerance in hard red spring wheat (HRSW) in northern USA is a prerequisite for developing drought-tolerant cultivars for this region. An association mapping (AM) study for drought tolerance in spring …
View article: Identification of Main-Effect and Environmental Interaction QTL and Their Candidate Genes for Drought Tolerance in a Wheat RIL Population Between Two Elite Spring Cultivars
Identification of Main-Effect and Environmental Interaction QTL and Their Candidate Genes for Drought Tolerance in a Wheat RIL Population Between Two Elite Spring Cultivars Open
Understanding the genetics of drought tolerance can expedite the development of drought-tolerant cultivars in wheat. In this study, we dissected the genetics of drought tolerance in spring wheat using a recombinant inbred line (RIL) popula…
View article: Expansion of Internal Hyphal Growth in Fusarium Head Blight–Infected Grains Contributes to the Elevated Mycotoxin Production During the Malting Process
Expansion of Internal Hyphal Growth in Fusarium Head Blight–Infected Grains Contributes to the Elevated Mycotoxin Production During the Malting Process Open
Fusarium head blight (FHB) and the occurrence of mycotoxins is the largest food safety threat to malting and brewing grains. Worldwide surveys of commercial beers have reported that the trichothecene mycotoxin deoxynivalenol (DON) is the m…
View article: Mutations in a barley cytochrome P450 gene enhances pathogen induced programmed cell death and cutin layer instability
Mutations in a barley cytochrome P450 gene enhances pathogen induced programmed cell death and cutin layer instability Open
Disease lesion mimic mutants (DLMMs) are characterized by spontaneous development of necrotic spots with various phenotypes designated as necrotic ( nec ) mutants in barley. The nec mutants were traditionally considered to have aberrant re…
View article: Prevalence of Musculoskeletal Disorders among Women Pediatric Physiotherapist in Surat
Prevalence of Musculoskeletal Disorders among Women Pediatric Physiotherapist in Surat Open
View article: The Barley HvWRKY6 Transcription Factor Is Required for Resistance Against Pyrenophora teres f. teres
The Barley HvWRKY6 Transcription Factor Is Required for Resistance Against Pyrenophora teres f. teres Open
Barley is an important cereal crop worldwide because of its use in the brewing and distilling industry. However, adequate supplies of quality malting barley are threatened by global climate change due to drought in some regions and excess …
View article: Genome-Wide Association Mapping for Yield and Related Traits Under Drought Stressed and Non-stressed Environments in Wheat
Genome-Wide Association Mapping for Yield and Related Traits Under Drought Stressed and Non-stressed Environments in Wheat Open
Supplementary table S3. List of markers used for genome wide association study.
View article: Vision, challenges and opportunities for a Plant Cell Atlas
Vision, challenges and opportunities for a Plant Cell Atlas Open
Note: for full list of Plant Cell Atlas Consortium, see publication (p17). With growing populations and pressing environmental problems, future economies will be increasingly plant-based. Now is the time to reimagine plant science as a cri…
View article: Localization of hyphal growth associated with mycotoxin production during the malting of Fusarium head blight infected grains
Localization of hyphal growth associated with mycotoxin production during the malting of Fusarium head blight infected grains Open
Fusarium head blight (FHB) and the occurrence of mycotoxins is the largest food safety threat to malting and brewing grains. Objectives of the current study were to localize the growth of Fusarium within FHB infected kernels and to associa…
View article: Visualization of spatial gene expression in plants by modified RNAscope fluorescent in situ hybridization
Visualization of spatial gene expression in plants by modified RNAscope fluorescent in situ hybridization Open
View article: <i>rcs5-</i>mediated spot blotch resistance in barley is conferred by wall-associated kinases that resist pathogen manipulation
<i>rcs5-</i>mediated spot blotch resistance in barley is conferred by wall-associated kinases that resist pathogen manipulation Open
Plant biotrophic pathogen disease resistances rely on immunity receptor-mediated programmed cell death (PCD) responses, but specialized necrotrophic/hemi-biotrophic pathogens hijack these mechanisms to colonize the resulting dead tissue in…
View article: Visualization of spatial gene expression in plants by modified RNAscope fluorescent<i>in situ</i>hybridization
Visualization of spatial gene expression in plants by modified RNAscope fluorescent<i>in situ</i>hybridization Open
In situ analysis of biomarkers such as DNA, RNA and proteins are important for research and diagnostic purposes. At the RNA level, plant gene expression studies rely on qPCR, RNAseq and probe-based i n s itu h ybridization (ISH). However, …
View article: Genetic Variability, Correlation and Path Coefficient Analysis for Yield and Its Attributing Traits in Cowpea [Vigna unguiculata (L.) Walp] Accessions
Genetic Variability, Correlation and Path Coefficient Analysis for Yield and Its Attributing Traits in Cowpea [Vigna unguiculata (L.) Walp] Accessions Open
Cowpea [Vigna unguiculata (L.) walp.]; also known as a black-eyed pea or Southern pea is self-pollinated crop belongs to the family Fabaceae. In this experimentation, thirty accessions were evaluated for eleven agro-morphological traits at…
View article: Understanding the expression dynamics of symbiont rhizobial <i>nifH</i> and nitrogen assimilatory <i>NR</i> and <i>GS</i> genes in dry bean (<i>Phaseolus vulgaris</i> L.) genotypes at various growth stages
Understanding the expression dynamics of symbiont rhizobial <i>nifH</i> and nitrogen assimilatory <i>NR</i> and <i>GS</i> genes in dry bean (<i>Phaseolus vulgaris</i> L.) genotypes at various growth stages Open
Selection of dry bean ( Phaseolus vulgaris L.) cultivars based on their symbiotic nitrogen fixation (SNF) could reduce the fertilizer N requirement. The nifH gene in the bacterial symbiont facilitates the organic N assimilation by N‐assimi…
View article: Transcriptome-wide association study identifies putative elicitors/suppressor of Puccinia graminis f. sp. tritici that modulate barley rpg4-mediated stem rust resistance
Transcriptome-wide association study identifies putative elicitors/suppressor of Puccinia graminis f. sp. tritici that modulate barley rpg4-mediated stem rust resistance Open
View article: Characterization of genes required for both Rpg1 and rpg4-mediated wheat stem rust resistance in barley
Characterization of genes required for both Rpg1 and rpg4-mediated wheat stem rust resistance in barley Open
Genetic mapping and exome capture rapidly identified candidate gene/s that function in RMRL and Rpg1 mediated resistance pathway/s. One or more of the identified candidate rpr9 genes are essential in the only two known effective stem rust …
View article: Shedding Light on Penetration of Cereal Host Stomata by Wheat Stem Rust Using Improved Methodology
Shedding Light on Penetration of Cereal Host Stomata by Wheat Stem Rust Using Improved Methodology Open
View article: Additional file 9: of Characterization of genes required for both Rpg1 and rpg4-mediated wheat stem rust resistance in barley
Additional file 9: of Characterization of genes required for both Rpg1 and rpg4-mediated wheat stem rust resistance in barley Open
Table S4. List of fifteen annotated high confidence SKP-1 like genes in barley whole genome assembly. (XLSX 51 kb)
View article: Additional file 2: of Characterization of genes required for both Rpg1 and rpg4-mediated wheat stem rust resistance in barley
Additional file 2: of Characterization of genes required for both Rpg1 and rpg4-mediated wheat stem rust resistance in barley Open
Table S2. List of 2701 redundant loci across the seven chromosomes of barley used for the genetic map construction. (XLSX 73 kb)
View article: Additional file 1: of Characterization of genes required for both Rpg1 and rpg4-mediated wheat stem rust resistance in barley
Additional file 1: of Characterization of genes required for both Rpg1 and rpg4-mediated wheat stem rust resistance in barley Open
Table S1. Seedling QCCJ phenotyping and root length measurement data on Hv584/rpr9 F2:6 RIL population. (XLSX 30 kb)
View article: MOESM2 of Transcriptome-wide association study identifies putative elicitors/suppressor of Puccinia graminis f. sp. tritici that modulate barley rpg4-mediated stem rust resistance
MOESM2 of Transcriptome-wide association study identifies putative elicitors/suppressor of Puccinia graminis f. sp. tritici that modulate barley rpg4-mediated stem rust resistance Open
Additional file 2. A FASTA file containing coding sequences of the updated gene models of Pgt using the transcript sequences generated from this study in addition to the publicly available gene models of reference genome of Pgt race SCCL.