Steven Huynh
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View article: American black bear (Ursus americanus) as a potential host for Campylobacter jejuni
American black bear (Ursus americanus) as a potential host for Campylobacter jejuni Open
The Gram-negative bacterium Campylobacter jejuni is part of the commensal gut microbiota of numerous animal species and a leading cause of bacterial foodborne illness in humans. Most complete genomes of C. jejuni are from strains isolated …
View article: Complete mitochondrial genome of the psammophilic fungus <i>Mallocybe</i> sp. (Inocybaceae, Basidiomycota) from Cambodia
Complete mitochondrial genome of the psammophilic fungus <i>Mallocybe</i> sp. (Inocybaceae, Basidiomycota) from Cambodia Open
We present the complete mitochondrial genome of a psammophilic Mallocybe sp. from Koh Rong Sanloem, Cambodia. The mitochondrial genome of Mallocybe sp. is circular, AT skewed (70.2%), and 21,500 bp in length. It contains the conserved fung…
View article: American black bear ( <i>Ursus americanus</i> ) as a potential host for <i>Campylobacter jejuni</i>
American black bear ( <i>Ursus americanus</i> ) as a potential host for <i>Campylobacter jejuni</i> Open
The Gram-negative bacterium Campylobacter jejuni is part of the commensal gut microbiota of numerous animal species and a leading cause of bacterial foodborne illness in humans. Most complete genomes of C. jejuni are from strains isolated …
View article: <i>Campylobacter jejuni</i> resistance to human milk involves the acyl carrier protein AcpP
<i>Campylobacter jejuni</i> resistance to human milk involves the acyl carrier protein AcpP Open
Campylobacter jejuni is a common foodborne pathogen worldwide that is associated with high rates of morbidity and mortality among infants in low- to middle-income countries (LMICs). Human milk provides infants with an important source of n…
View article: Sharing of <i>cmeRABC</i> alleles between <i>C. coli</i> and <i>C. jejuni</i> associated with extensive drug resistance in <i>Campylobacter</i> isolates from infants and poultry in the Peruvian Amazon
Sharing of <i>cmeRABC</i> alleles between <i>C. coli</i> and <i>C. jejuni</i> associated with extensive drug resistance in <i>Campylobacter</i> isolates from infants and poultry in the Peruvian Amazon Open
Campylobacter is a serious health threat because of the rapid progressive evolution of antimicrobial resistance and efficient transmission from zoonotic as well as human sources. Resistance to fluoroquinolones and macrolides is particularl…
View article: Bacterial diversity of cantaloupes and soil from Arizona and California commercial fields at the point of harvest
Bacterial diversity of cantaloupes and soil from Arizona and California commercial fields at the point of harvest Open
Across the United States, melons are a high demand crop reaching a net production of 2.7 million tons in 2020 with an economic value of $915 million dollars. The goal of this study was to characterize the bacterial diversity of cantaloupe …
View article: Bacterial community shifts of commercial apples, oranges, and peaches at different harvest points across multiple growing seasons
Bacterial community shifts of commercial apples, oranges, and peaches at different harvest points across multiple growing seasons Open
Assessing the microbes present on tree fruit carpospheres as the fruit enters postharvest processing could have useful applications, as these microbes could have a major influence on spoilage, food safety, verification of packing process c…
View article: Bacterial diversity and composition on the rinds of specific melon cultivars and hybrids from across different growing regions in the United States
Bacterial diversity and composition on the rinds of specific melon cultivars and hybrids from across different growing regions in the United States Open
The goal of this study was to characterize the bacterial diversity on different melon varieties grown in different regions of the US, and determine the influence that region, rind netting, and variety of melon has on the composition of the…
View article: Novel rpsK / rpsD primer-probe assay improves detection of Campylobacter jejuni and Campylobacter coli in human stool
Novel rpsK / rpsD primer-probe assay improves detection of Campylobacter jejuni and Campylobacter coli in human stool Open
Campylobacter causes bacterial enteritis, dysentery, and growth faltering in children in low- and middle-income countries (LMICs). Campylobacter spp. are fastidious organisms, and their detection often relies on culture independent diagnos…
View article: Genomic Analysis Points to Multiple Genetic Mechanisms for Non-Transformable Campylobacter jejuni ST-50
Genomic Analysis Points to Multiple Genetic Mechanisms for Non-Transformable Campylobacter jejuni ST-50 Open
Campylobacter jejuni and Campylobacter coli are well known for their natural competence, i.e., their capacity for the uptake of naked DNA with subsequent transformation. This study identifies non-transformable C. jejuni and C. coli strains…
View article: Genomic resistant determinants of multidrug-resistant Campylobacter spp. isolates in Peru
Genomic resistant determinants of multidrug-resistant Campylobacter spp. isolates in Peru Open
View article: Bacterial diversity and composition on the rinds of specific melon cultivars and hybrids from across different growing regions in the United States
Bacterial diversity and composition on the rinds of specific melon cultivars and hybrids from across different growing regions in the United States Open
The goal of this study was to characterize the bacterial diversity on different melon varieties grown in different regions of the US, and determine the influence that region, rind netting, and variety of melon has on the composition of the…
View article: Bacterial Diversity Shifts of Commercial Tree Fruit Carpospheres at Different Harvest Points Across Multiple Growing Seasons
Bacterial Diversity Shifts of Commercial Tree Fruit Carpospheres at Different Harvest Points Across Multiple Growing Seasons Open
View article: The bile salt deoxycholate induces Campylobacter jejuni genetic point mutations that promote increased antibiotic resistance and fitness
The bile salt deoxycholate induces Campylobacter jejuni genetic point mutations that promote increased antibiotic resistance and fitness Open
Oxidative damage to DNA is a significant source of mutations in living organisms. While DNA damage must be repaired to maintain the integrity of the genome and cell survival, errors made during DNA repair may contribute to evolution. Previ…
View article: “Candidatus Campylobacter infans” detection is not associated with diarrhea in children under the age of 2 in Peru
“Candidatus Campylobacter infans” detection is not associated with diarrhea in children under the age of 2 in Peru Open
A working hypothesis is that less common species of Campylobacter (other than C . jejuni and C . coli) play a role in enteric disease among children in low resource settings and explain the gap between the detection of Campylobacter using …
View article: Shotgun metagenomics of fecal samples from children in Peru reveals frequent complex co-infections with multiple Campylobacter species
Shotgun metagenomics of fecal samples from children in Peru reveals frequent complex co-infections with multiple Campylobacter species Open
Campylobacter spp. are a major cause of bacterial diarrhea worldwide and are associated with high rates of mortality and linear growth faltering in children living in low- to middle-income countries (LMICs). Campylobacter jejuni and Campyl…
View article: Complete Genome Sequences of Two Bacillus velezensis Strains Isolated from California Raisin Vineyard Soils
Complete Genome Sequences of Two Bacillus velezensis Strains Isolated from California Raisin Vineyard Soils Open
Bacillus velezensis strains JP3042 and JP3144 were isolated from California raisin vineyard soils and were selected for further study of in vitro antifungal activity. Here, we present the complete genome sequences of these strains to aid i…
View article: Utilization Efficiency of Human Milk Oligosaccharides by Human-Associated <i>Akkermansia</i> Is Strain Dependent.
Utilization Efficiency of Human Milk Oligosaccharides by Human-Associated <i>Akkermansia</i> Is Strain Dependent. Open
Akkermansia muciniphila is a mucin-degrading bacterium found in the human gut and is often associated with positive human health. However, despite being detected by as early as 1 month of age, little is known about the role of Akkermans…
View article: Biomolecule sulphation and novel methylations related to Guillain-Barré syndrome-associated Campylobacter jejuni serotype HS:19
Biomolecule sulphation and novel methylations related to Guillain-Barré syndrome-associated Campylobacter jejuni serotype HS:19 Open
Campylobacter jejuni strains that produce sialylated lipooligosaccharides (LOS) can cause the immune-mediated disease Guillain-Barré syndrome (GBS). The risk of GBS after infection with C. jejuni Penner serotype HS:19 is estimated to be at…
View article: Utilization Efficiency of Human Milk Oligosaccharides by Human-Associated <i>Akkermansia</i> Is Strain Dependent
Utilization Efficiency of Human Milk Oligosaccharides by Human-Associated <i>Akkermansia</i> Is Strain Dependent Open
Human milk oligosaccharides (HMOs) are the third most abundant component of breast milk and provide several benefits to developing infants, including the recruitment of beneficial bacteria to the human gut. Akkermansia strains are largely …
View article: Complete Genome Sequence of Enterobacter asburiae Strain AEB30, Determined Using Illumina and PacBio Sequencing
Complete Genome Sequence of Enterobacter asburiae Strain AEB30, Determined Using Illumina and PacBio Sequencing Open
The complete genome sequence of Enterobacter asburiae strain AEB30 is presented. The strain was isolated from store-bought ginger in Albany, CA, in 2016.
View article: Complete Genome Sequence of Pantoea agglomerans ASB05 Using Illumina and PacBio Sequencing
Complete Genome Sequence of Pantoea agglomerans ASB05 Using Illumina and PacBio Sequencing Open
We present the complete genome sequence of Pantoea agglomerans ASB05 and three associated plasmids, generated using a combination of the Illumina and PacBio platforms. P. agglomerans ASB05 was isolated from fresh cherries purchased in Alba…
View article: Utilization efficiency of human milk oligosaccharides by human-associated <i>Akkermansia</i> is strain-dependent
Utilization efficiency of human milk oligosaccharides by human-associated <i>Akkermansia</i> is strain-dependent Open
Akkermansia muciniphila are mucin degrading bacteria found in the human gut and are often associated with positive human health. However, despite being detected as early as one month of age, little is known about the role of Akkermansia in…
View article: Genomic Characterization of Salmonella typhimurium DT104 Strains Associated with Cattle and Beef Products
Genomic Characterization of Salmonella typhimurium DT104 Strains Associated with Cattle and Beef Products Open
Salmonella enterica subsp. enterica serovar Typhimurium DT104, a multidrug-resistant phage type, has emerged globally as a major cause of foodborne outbreaks particularly associated with contaminated beef products. In this study, we sequen…
View article: Genomic Characterization of Campylobacter jejuni Adapted to the Guinea Pig (Cavia porcellus) Host
Genomic Characterization of Campylobacter jejuni Adapted to the Guinea Pig (Cavia porcellus) Host Open
Campylobacter jejuni is the leading bacterial cause of gastroenteritis worldwide with excessive incidence in low-and middle-income countries (LMIC). During a survey for C. jejuni from putative animal hosts in a town in the Peruvian Amazon,…
View article: Biomolecule sulphation and novel methylations related to Guillain-Barré syndrome-associated Campylobacter jejuni serotype HS:19
Biomolecule sulphation and novel methylations related to Guillain-Barré syndrome-associated Campylobacter jejuni serotype HS:19 Open
Supplementary Material for ‘Biomolecule sulfation and novel methylations related to Guillain-Barré syndrome-associated Campylobacter jejuni serotype HS:19' as published in Microbial Genomics.
View article: Effect of the electron donating group on the excited-state electronic nature and epsilon-near-zero properties of curcuminoid-borondifluoride dyes
Effect of the electron donating group on the excited-state electronic nature and epsilon-near-zero properties of curcuminoid-borondifluoride dyes Open
Epsilon-near-zero (ENZ) properties have been reported in organic molecular films.
View article: DNA adenine methylase, not the PstI restriction-modification system, regulates virulence gene expression in Shiga toxin-producing Escherichia coli
DNA adenine methylase, not the PstI restriction-modification system, regulates virulence gene expression in Shiga toxin-producing Escherichia coli Open
We previously reported a distinct methylome between the two Shiga toxin-producing Escherichia coli (STEC) O145:H28 strains linked to the 2010 U.S. lettuce-associated outbreak (RM13514) and the 2007 Belgium ice cream-associated outbreak (RM…
View article: Dataset of the phospholipidome and transcriptome of Campylobacter jejuni under different growth conditions
Dataset of the phospholipidome and transcriptome of Campylobacter jejuni under different growth conditions Open
View article: A porcine ligated loop model reveals new insight into the host immune response against<i>Campylobacter jejuni</i>
A porcine ligated loop model reveals new insight into the host immune response against<i>Campylobacter jejuni</i> Open
The symptoms of infectious diarrheal disease are mediated by a combination of a pathogen's virulence factors and the host immune system. Campylobacter jejuni is the leading bacterial cause of diarrhea worldwide due to its near-ubiqu…