Steven Carrell
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View article: Phenotypically anchored transcriptomics across diverse agrichemicals reveals conserved pathways and unique gene expression signatures in zebrafish
Phenotypically anchored transcriptomics across diverse agrichemicals reveals conserved pathways and unique gene expression signatures in zebrafish Open
Agrichemicals such as herbicides, fungicides, insecticides, and biocides are widely used in agriculture, yet some are associated with adverse effects in humans and the environment. While many of these chemicals have been extensively studie…
View article: De Novo Leaf Transcriptome Assembly and Metagenomic Studies of Coast Live Oak (Quercus agrifolia)
De Novo Leaf Transcriptome Assembly and Metagenomic Studies of Coast Live Oak (Quercus agrifolia) Open
Coast Live Oak (Quercus agrifolia) is a native keystone hardwood species of the California coastal and semi-arid forest environment. Q. agrifolia is threatened by pathogens such as the oomycete Phytophthora ramorum, which is known to cause…
View article: Development of a lambda Red based system for gene deletion in Chlamydia
Development of a lambda Red based system for gene deletion in Chlamydia Open
The ability to efficiently target loci in the Chlamydia trachomatis genome for deletion remains a desirable goal in the field and new strategies need to be developed and refined. Here we describe the development and application of a lambda…
View article: Haplotype-Resolved genome assembly of the Microvine
Haplotype-Resolved genome assembly of the Microvine Open
Developing a tractable genetic engineering and gene editing system is an essential tool for grapevine. We initiated a plant transformation and biotechnology program at Oregon State University using the grape microvine system (V. vinifera) …
View article: Draft Transcriptomic Resources for the California Native Plant Trichostema lanatum from the Angeles National Forest
Draft Transcriptomic Resources for the California Native Plant Trichostema lanatum from the Angeles National Forest Open
This project established transcriptome and soil metagenomic resources for Trichostema lanatum [...]
View article: Abstract 1639: Rapid PCR-based Genetic Typing System across Chlamydia trachomatis
Abstract 1639: Rapid PCR-based Genetic Typing System across Chlamydia trachomatis Open
View article: Genomic Analysis of MSM Rectal Chlamydia trachomatis Isolates Identifies Predicted Tissue-Tropic Lineages Generated by Intraspecies Lateral Gene Transfer-Mediated Evolution
Genomic Analysis of MSM Rectal Chlamydia trachomatis Isolates Identifies Predicted Tissue-Tropic Lineages Generated by Intraspecies Lateral Gene Transfer-Mediated Evolution Open
Chlamydia trachomatis is an obligate intracellular bacterium that causes serious diseases in humans. Rectal infection and disease caused by this pathogen are important yet understudied aspects of C. trachomatis natural history.
View article: A broad-spectrum cloning vector that exists as both an integrated element and a free plasmid in Chlamydia trachomatis
A broad-spectrum cloning vector that exists as both an integrated element and a free plasmid in Chlamydia trachomatis Open
Plasmid transformation of chlamydiae has created new opportunities to investigate host–microbe interactions during chlamydial infections; however, there are still limitations. Plasmid transformation requires a replicon derived from the nat…
View article: Identification of Driver Phone Usage Violations via State-of-the-Art Object Detection with Tracking
Identification of Driver Phone Usage Violations via State-of-the-Art Object Detection with Tracking Open
The use of mobiles phones when driving has been
\na major factor when it comes to road traffic incidents and
\nthe process of capturing such violations can be a laborious
\ntask. Advancements in both modern object detection frameworks
\nan…
View article: Inter‐species lateral gene transfer focused on the <i>Chlamydia</i> plasticity zone identifies loci associated with immediate cytotoxicity and inclusion stability
Inter‐species lateral gene transfer focused on the <i>Chlamydia</i> plasticity zone identifies loci associated with immediate cytotoxicity and inclusion stability Open
Chlamydia muridarum actively grows in murine mucosae and is a representative model of human chlamydial genital tract disease. In contrast, C. trachomatis infections in mice are limited and rarely cause disease. The factors that contribute …
View article: Identification of Driver Phone Usage Violations via State-of-the-Art Object Detection with Tracking
Identification of Driver Phone Usage Violations via State-of-the-Art Object Detection with Tracking Open
The use of mobiles phones when driving have been a major factor when it comes to road traffic incidents and the process of capturing such violations can be a laborious task. Advancements in both modern object detection frameworks and high-…
View article: Genomics and Chlamydial Persistence <i>In Vivo</i>
Genomics and Chlamydial Persistence <i>In Vivo</i> Open
W e read with interest the recent paper by Somboonna and colleagues, addressing changes to tryptophan synthase in a single Chlamydia trachomatis strain that had an aberrant growth phenotype in vitro (1).This strain was isolated four times,…
View article: Chromosomal Recombination Targets in <i>Chlamydia</i> Interspecies Lateral Gene Transfer
Chromosomal Recombination Targets in <i>Chlamydia</i> Interspecies Lateral Gene Transfer Open
Genome sequence analysis has demonstrated that there is widespread lateral gene transfer among strains within the species C. trachomatis and with other closely related Chlamydia species in laboratory experiments. This is in contrast to the…
View article: Development of Transposon Mutagenesis for Chlamydia muridarum
Development of Transposon Mutagenesis for Chlamydia muridarum Open
Historical issues with genetic manipulation of Chlamydia have prevented rigorous functional genetic characterization of the ∼1,000 genes in chlamydial genomes. Here, we report the development of a transposon mutagenesis system for C. murid…