Sunil Kumar Mukherjee
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View article: Methylome differences among barley inbreds and their association with genomic, transcriptomic, and phenotypic variation
Methylome differences among barley inbreds and their association with genomic, transcriptomic, and phenotypic variation Open
Epigenetic variation can play a crucial role in explaining the missing heritability of complex traits. To investigate genome-wide methylation in spring barley (Hordeum vulgare subsp. vulgare), we performed whole genome bisulfite sequencing…
View article: Sequential galvanic replacement mediated platelet Ru nanozyme for enhanced peroxidase-mimicking efficiency in neutral media to combat gastrointestinal bacterial infection
Sequential galvanic replacement mediated platelet Ru nanozyme for enhanced peroxidase-mimicking efficiency in neutral media to combat gastrointestinal bacterial infection Open
View article: Chiral Self‐Assembly of a Pyrene‐Appended Glutamylalanine Dipeptide and Its Charge Transfer Complex: Fabrication of Magneto‐Responsive Hydrogels and Human Cell Imaging
Chiral Self‐Assembly of a Pyrene‐Appended Glutamylalanine Dipeptide and Its Charge Transfer Complex: Fabrication of Magneto‐Responsive Hydrogels and Human Cell Imaging Open
The formation of a robust, self‐healing hydrogel of a novel pyrene‐appended dipeptide, Py‐E‐A (L‐Glutamic acid short as E; L‐Alanine short as A) is demonstrated. Detailed studies suggest that nanoscopic fibers with a length of several micr…
View article: Biophysical and biochemical bases of resistance to Maruca vitrata L. in selected vegetable cowpea genotypes
Biophysical and biochemical bases of resistance to Maruca vitrata L. in selected vegetable cowpea genotypes Open
Host plant resistance is a crucial factor in mitigating the damages caused by Maruca vitrata, the most devastating pest of vegetable cowpea, commonly known as the legume pod borer. Understanding the biophysical and biochemical aspects of r…
View article: Expanding Possibilities for Foreign Gene Expression by Cucumber Green Mottle Mosaic Virus Genome-Based Bipartite Vector System
Expanding Possibilities for Foreign Gene Expression by Cucumber Green Mottle Mosaic Virus Genome-Based Bipartite Vector System Open
Expanding possibilities for foreign gene expression in cucurbits, we present a novel approach utilising a bipartite vector system based on the cucumber green mottle mosaic virus (CGMMV) genome. Traditional full-length CGMMV vectors face li…
View article: Accelerated Long-Fragment Circular PCR for Genetic Manipulation of Plant Viruses in Unveiling Functional Genomics
Accelerated Long-Fragment Circular PCR for Genetic Manipulation of Plant Viruses in Unveiling Functional Genomics Open
Molecular cloning, a crucial prerequisite for engineering plasmid constructs intended for functional genomic studies, relies on successful restriction and ligation processes. However, the lack of unique restriction sites often hinders cons…
View article: Host microRNAs exhibit differential propensity to interact with SARS-CoV-2 and variants of concern
Host microRNAs exhibit differential propensity to interact with SARS-CoV-2 and variants of concern Open
View article: Silencing of Thrips palmi UHRF1BP1 and PFAS Using Antisense Oligos Induces Mortality and Reduces Tospovirus Titer in Its Vector
Silencing of Thrips palmi UHRF1BP1 and PFAS Using Antisense Oligos Induces Mortality and Reduces Tospovirus Titer in Its Vector Open
Thrips palmi (Thysanoptera: Thripidae) is an important pest of vegetables, legumes, and ornamentals. In addition, it transmits several plant viruses. T. palmi genes associated with innate immunity, endocytosis-related pathways, and cuticul…
View article: Random distribution of nucleotide polymorphism throughout the genome of tomato-infecting begomovirus species occurring in India: implication in PCR based diagnosis
Random distribution of nucleotide polymorphism throughout the genome of tomato-infecting begomovirus species occurring in India: implication in PCR based diagnosis Open
View article: Development of a Polymerase Spiral Reaction-Based Isothermal Assay for Rapid Identification of Thrips palmi
Development of a Polymerase Spiral Reaction-Based Isothermal Assay for Rapid Identification of Thrips palmi Open
Thrips cause considerable economic losses to a wide range of food, feed, and forest crops. They also transmit several plant viruses. Being cryptic, it is often difficult to distinguish thrips species in crops and large consignments by conv…
View article: Identification and Functional Analysis of Four RNA Silencing Suppressors in Begomovirus Croton Yellow Vein Mosaic Virus
Identification and Functional Analysis of Four RNA Silencing Suppressors in Begomovirus Croton Yellow Vein Mosaic Virus Open
Croton yellow vein mosaic virus (CYVMV), a species in the genus Begomovirus , is a prolific monopartite begomovirus in the Indian sub-continent. CYVMV infects multiple crop plants to cause leaf curl disease. Plants have developed host RNA …
View article: Microstructural Investigation of Sonochemically Synthesized Zn Substituted Cufe2o4 Nanoparticles for Heterogeneous Green Catalytic Click Chemistry and Dye Degradation
Microstructural Investigation of Sonochemically Synthesized Zn Substituted Cufe2o4 Nanoparticles for Heterogeneous Green Catalytic Click Chemistry and Dye Degradation Open
View article: Direct Foliar Application of dsRNA Derived From the Full-Length Gene of NSs of Groundnut Bud Necrosis Virus Limits Virus Accumulation and Symptom Expression
Direct Foliar Application of dsRNA Derived From the Full-Length Gene of NSs of Groundnut Bud Necrosis Virus Limits Virus Accumulation and Symptom Expression Open
Groundnut bud necrosis virus (GBNV) is the most significant member of the genus Orthotospovirus occurring in the Indian subcontinent. There is hardly any effective measure to prevent GBNV in crop plants. In order to develop GBNV infection …
View article: Quality assessment of Outgoing Longwave Radiation (OLR) derived from INSAT-3D Imager: Impact of GSICS correction
Quality assessment of Outgoing Longwave Radiation (OLR) derived from INSAT-3D Imager: Impact of GSICS correction Open
The INSAT-3D Outgoing longwave radiation (OLR), a fast-delivery level-2 product at pixel resolution, is being generated operationally from every half hourly acquisition of Imager Payload of INSAT-3D.In addition to this, binned daily and mo…
View article: Transovarial Transmission of Dolichos Yellow Mosaic Virus by Its Vector, Bemisia tabaci Asia II 1
Transovarial Transmission of Dolichos Yellow Mosaic Virus by Its Vector, Bemisia tabaci Asia II 1 Open
The cultivation of dolichos bean [ Lablab purpureus (L.) Sweet] has been severely affected by dolichos yellow mosaic virus (DoYMV, Begomovirus ) transmitted by whitefly, Bemisia tabaci (Hemiptera: Aleyrodidae). We tested the transovarial t…
View article: Sub-cellular localization of suppressor proteins of tomato leaf curl New Delhi virus
Sub-cellular localization of suppressor proteins of tomato leaf curl New Delhi virus Open
View article: Overexpression of an insect virus encoded silencing suppressor does not enhance plants’ susceptibility to its natural virus
Overexpression of an insect virus encoded silencing suppressor does not enhance plants’ susceptibility to its natural virus Open
View article: Secondary siRNAs in Plants: Biosynthesis, Various Functions, and Applications in Virology
Secondary siRNAs in Plants: Biosynthesis, Various Functions, and Applications in Virology Open
The major components of RNA silencing include both transitive and systemic small RNAs, which are technically called secondary sRNAs. Double-stranded RNAs trigger systemic silencing pathways to negatively regulate gene expression. The secon…
View article: Prediction of putative regulatory elements in the subgenomic promoters of cucumber green mottle mosaic virus and their interactions with the RNA dependent RNA polymerase domain
Prediction of putative regulatory elements in the subgenomic promoters of cucumber green mottle mosaic virus and their interactions with the RNA dependent RNA polymerase domain Open
View article: RNAi suppressor: The hidden weapon of SARS-CoV
RNAi suppressor: The hidden weapon of SARS-CoV Open
View article: Interaction of dengue NS3 with human RNA silencing machinery through HSPA1A
Interaction of dengue NS3 with human RNA silencing machinery through HSPA1A Open
Viruses encode multiple proteins that interact with different host factors to aid in their establishment inside the host. Viral Suppressor of RNA silencing (VSR) are one such class of proteins that have been shown to interact with componen…
View article: Multiplexed editing of a begomovirus genome restricts escape mutant formation and disease development
Multiplexed editing of a begomovirus genome restricts escape mutant formation and disease development Open
Whitefly-transmitted begomoviruses cause serious damage to many economically important food, feed, and fiber crops. Numerous vegetable crops are severely affected and chilli leaf curl virus (ChiLCV) is the most dominant and widely distribu…
View article: PAmiRDB: A web resource for plant miRNAs targeting viruses
PAmiRDB: A web resource for plant miRNAs targeting viruses Open
MicroRNAs (miRNAs) have emerged to be essential constituents of host antiviral-defense mechanisms. The miRNA mediated antiviral mechanism was first experimentally established in animals, which proved that host miRNAs regulate viral gene ex…
View article: Distribution of Weekly Rainfall and Probability Analysis for Crop Planning in Bastar Region of Chhattisgarh
Distribution of Weekly Rainfall and Probability Analysis for Crop Planning in Bastar Region of Chhattisgarh Open
View article: Role of plant growth regulator’s in strawberry
Role of plant growth regulator’s in strawberry Open
Strawberry is one of the most delicious fruits of the world, which is a rich source of vitamins and minerals, and has fabulous flavor and tantalizing aroma. It contains minerals, vitamins and also anti-cancer component called ellagic acid.…
View article: Identification and comparative analysis of microRNAs from tomato varieties showing contrasting response to ToLCV infections
Identification and comparative analysis of microRNAs from tomato varieties showing contrasting response to ToLCV infections Open
View article: s8ORF2 protein of infectious salmon anaemia virus is a RNA-silencing suppressor and interacts with Salmon salar Mov10 (SsMov10) of the host RNAi machinery
s8ORF2 protein of infectious salmon anaemia virus is a RNA-silencing suppressor and interacts with Salmon salar Mov10 (SsMov10) of the host RNAi machinery Open
View article: RNAi-derived transgenic resistance to Mungbean yellow mosaic India virus in cowpea
RNAi-derived transgenic resistance to Mungbean yellow mosaic India virus in cowpea Open
Cowpea is an important grain legume crop of Africa, Latin America, and Southeast Asia. Leaf curl and golden mosaic diseases caused by Mungbean yellow mosaic India virus (MYMIV) have emerged as most devastating viral diseases of cowpea in S…
View article: An RNAi-based high-throughput screening assay to identify small molecule inhibitors of hepatitis B virus replication
An RNAi-based high-throughput screening assay to identify small molecule inhibitors of hepatitis B virus replication Open
View article: Peer Review #1 of "miRMOD: a tool for identification and analysis of 5′ and 3′ miRNA modifications in Next Generation Sequencing small RNA data (v0.1)"
Peer Review #1 of "miRMOD: a tool for identification and analysis of 5′ and 3′ miRNA modifications in Next Generation Sequencing small RNA data (v0.1)" Open
In the past decade, the microRNAs (miRNAs) have emerged to be important regulators of gene expression across various species.Several studies have confirmed different types of post-transcriptional modifications at terminal ends of miRNAs.Th…