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View article: MaD: Macromolecular Descriptors for Integrative Dynamic Modeling Supported by Cryo-EM Data
MaD: Macromolecular Descriptors for Integrative Dynamic Modeling Supported by Cryo-EM Data Open
The determination of atomic structures of large flexible systems remains a challenging task despite the recent advances in cryo-electron microscopy (cryo-EM) and de novo protein structure prediction. Few hybrid methods truly consider dynam…
View article: New Methods for the Integrative Dynamic Modeling of Biomolecular Structures
New Methods for the Integrative Dynamic Modeling of Biomolecular Structures Open
The true understanding of most cellular functions is only really achievable through the structural determination of their underlying macromolecular assemblies. However, their size, large number of individual components and metastable state…
View article: MoleculARweb: A Website for Chemistry and Structural Biology Education Through Interactive Augmented Reality out of the Box in Commodity Devices
MoleculARweb: A Website for Chemistry and Structural Biology Education Through Interactive Augmented Reality out of the Box in Commodity Devices Open
Here we introduce MoleculARweb, a purely web-based AR platform for chemistry, molecular and structural biology education that runs out of the box in regular web browsers in ordinary computers, laptops, tablets and smartphones. Throu…
View article: MoleculARweb: A Website for Chemistry and Structural Biology Education Through Interactive Augmented Reality out of the Box in Commodity Devices
MoleculARweb: A Website for Chemistry and Structural Biology Education Through Interactive Augmented Reality out of the Box in Commodity Devices Open
Here we introduce MoleculARweb , a purely web-based AR platform for chemistry, molecular and structural biology education that runs out of the box in regular web browsers in ordinary computers, laptops, tablets and smartphones. Through reg…
View article: CLoNe: automated clustering based on local density neighborhoods for application to biomolecular structural ensembles
CLoNe: automated clustering based on local density neighborhoods for application to biomolecular structural ensembles Open
Motivation Proteins are intrinsically dynamic entities. Flexibility sampling methods, such as molecular dynamics or those arising from integrative modeling strategies, are now commonplace and enable the study of molecular conformational la…
View article: Modelling structures in cryo-EM maps
Modelling structures in cryo-EM maps Open
View article: KAP1 is an antiparallel dimer with a functional asymmetry
KAP1 is an antiparallel dimer with a functional asymmetry Open
KAP1 (KRAB domain–associated protein 1) plays a fundamental role in regulating gene expression in mammalian cells by recruiting different transcription factors and altering the chromatin state. In doing so, KAP1 acts both as a platform for…
View article: Disentangling constraints using viability evolution principles in integrative modeling of macromolecular assemblies
Disentangling constraints using viability evolution principles in integrative modeling of macromolecular assemblies Open
Predicting the structure of large molecular assemblies remains a challenging task in structural biology when using integrative modeling approaches. One of the main issues stems from the treatment of heterogeneous experimental data used to …