Thomas Vannier
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View article: Dissolved organic matter offsets the detrimental effects of climate change in the nitrogen‐fixing cyanobacterium <i>Crocosphaera</i>
Dissolved organic matter offsets the detrimental effects of climate change in the nitrogen‐fixing cyanobacterium <i>Crocosphaera</i> Open
Diazotrophs provide a significant reactive nitrogen source in the ocean. Increased warming and stratification may decrease nutrient availability in the future, forcing microbial communities toward using dissolved organic matter (DOM). Not …
View article: Prolonged dysbiosis and altered immunity under nutritional intervention in a physiological mouse model of severe acute malnutrition
Prolonged dysbiosis and altered immunity under nutritional intervention in a physiological mouse model of severe acute malnutrition Open
View article: Epithelial disruption drives mesendoderm differentiation in human pluripotent stem cells by enabling TGF-β protein sensing
Epithelial disruption drives mesendoderm differentiation in human pluripotent stem cells by enabling TGF-β protein sensing Open
View article: DOM offsets the detrimental effects of climate change in the nitrogen fixing cyanobacterium <em>Crocosphaera </em>
DOM offsets the detrimental effects of climate change in the nitrogen fixing cyanobacterium <em>Crocosphaera </em> Open
Diazotrophs provide a significant reactive nitrogen source in the ocean. Increased warming, stratification and acidification may decrease nutrient availability in the future influencing all ecosystems with deleterious impacts for primary p…
View article: Row fastq files generated by 16S rRNA sequencing for the metabarcoding analysis of Hidalgo-Villeda et al. paper
Row fastq files generated by 16S rRNA sequencing for the metabarcoding analysis of Hidalgo-Villeda et al. paper Open
Fastq files used for the microbiome profiling of the terminal ileal ans caecum content. Sequencing of the terminal ileal content was performed at the Institute Hospitalo-Universitaire Méditerannée Infection, Marseille, France. Sequencing o…
View article: Row fastq files generated by 16S rRNA sequencing for the metabarcoding analysis of Hidalgo-Villeda et al. paper
Row fastq files generated by 16S rRNA sequencing for the metabarcoding analysis of Hidalgo-Villeda et al. paper Open
Fastq files used for the microbiome profiling of the terminal ileal and caecum content. Sequencing of the terminal ileal content was performed at the Institute Hospitalo-Universitaire Méditerannée Infection, Marseille, France. Sequencing o…
View article: Row fastq files generated by 16S rRNA sequencing for the metabarcoding analysis of Hidalgo-Villeda et al. paper
Row fastq files generated by 16S rRNA sequencing for the metabarcoding analysis of Hidalgo-Villeda et al. paper Open
Fastq files used for the microbiome profiling of the terminal ileal and caecum content. Sequencing of the terminal ileal content was performed at the Institute Hospitalo-Universitaire Méditerannée Infection, Marseille, France. Sequencing o…
View article: Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems
Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems Open
Biogeographical studies have traditionally focused on readily visible organisms, but recent technological advances are enabling analyses of the large-scale distribution of microscopic organisms, whose biogeographical patterns have long bee…
View article: Author response: Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems
Author response: Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems Open
Article Figures and data Abstract Editor's evaluation eLife digest Introduction Results Discussion Materials and methods Appendix 1 Appendix 2 Appendix 3 Appendix 4 Appendix 5 Appendix 6 Appendix 7 Data availability References Decision let…
View article: Specialization of actin isoforms derived from the loss of key interactions with regulatory factors
Specialization of actin isoforms derived from the loss of key interactions with regulatory factors Open
View article: Disruption of Epithelial Integrity Drives Mesendoderm Differentiation in Human Induced Pluripotent Stem Cells by Enabling BMP and ACTIVIN Sensing
Disruption of Epithelial Integrity Drives Mesendoderm Differentiation in Human Induced Pluripotent Stem Cells by Enabling BMP and ACTIVIN Sensing Open
The processes of primitive streak formation and fate specification in the mammalian epiblast rely on complex interactions between morphogens and tissue organization. Little is known about how these instructive cues functionally interact to…
View article: Microbiome Analysis Workflow
Microbiome Analysis Workflow Open
This workflow performs a metabarcoding analysis from fastq files to the production of a report with result of the marker-gene analysis. The analysis are mainly been achieved using plugins from QIIME 2 (Bolyen et al., 2019).
View article: Diversity and evolution of bacterial bioluminescence genes in the global ocean
Diversity and evolution of bacterial bioluminescence genes in the global ocean Open
Although bioluminescent bacteria are the most abundant and widely distributed of all light-emitting organisms, the biological role and evolutionary history of bacterial luminescence are still shrouded in mystery. Bioluminescence has so far…
View article: Genome Resolved Biogeography of Mamiellales
Genome Resolved Biogeography of Mamiellales Open
Among marine phytoplankton, Mamiellales encompass several species from the genera Micromonas, Ostreococcus and Bathycoccus, which are important contributors to primary production. Previous studies based on single gene markers described the…
View article: Data from: Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems
Data from: Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems Open
Biogeographical studies have traditionally focused on readily visible organisms, but recent technological advances are enabling analyses of the large-scale distribution of microscopic organisms, whose biogeographical patterns have long bee…
View article: Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems
Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems Open
Biogeographical studies have traditionally focused on readily visible organisms, but recent technological advances are enabling analyses of the large-scale distribution of microscopic organisms, whose biogeographical patterns have long bee…
View article: Data from: Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems
Data from: Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems Open
Biogeographical studies have traditionally focused on readily visible organisms, but recent technological advances are enabling analyses of the large-scale distribution of microscopic organisms, whose biogeographical patterns have long bee…
View article: Data from: Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems
Data from: Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems Open
Biogeographical studies have traditionally focused on readily visible organisms, but recent technological advances are enabling analyses of the large-scale distribution of microscopic organisms, whose biogeographical patterns have long bee…
View article: The Ocean Gene Atlas: exploring the biogeography of plankton genes online
The Ocean Gene Atlas: exploring the biogeography of plankton genes online Open
The Ocean Gene Atlas is a web service to explore the biogeography of genes from marine planktonic organisms. It allows users to query protein or nucleotide sequences against global ocean reference gene catalogs. With just one click, the ab…
View article: The Ocean Gene Atlas: exploring the biogeography of plankton genes online
The Ocean Gene Atlas: exploring the biogeography of plankton genes online Open
The Ocean Gene Atlas is a web service to explore the biogeography of genes from marine planktonic organisms. It allows users to query protein or nucleotide sequences against global ocean reference gene catalogs. With just one click, the ab…
View article: Dynamique de la structure des génomes et de leur biogéographie dans l’océan : analyses comparatives des données métagénomiques du projet Tara Oceans pour l’étude de la microalgue Bathycoccus et des communautés planctoniques globales
Dynamique de la structure des génomes et de leur biogéographie dans l’océan : analyses comparatives des données métagénomiques du projet Tara Oceans pour l’étude de la microalgue Bathycoccus et des communautés planctoniques globales Open
Plankton is composed of all organisms that drift along the currents. Through its phytoplankton part, it produces as much oxygen as all terrestrial plants and it is an important regulator of the climatic system as well as the acidity of the…
View article: Survey of the green picoalga Bathycoccus genomes in the global ocean
Survey of the green picoalga Bathycoccus genomes in the global ocean Open
Bathycoccus is a cosmopolitan green micro-alga belonging to the Mamiellophyceae, a class of picophytoplankton that contains important contributors to oceanic primary production. A single species of Bathycoccus has been described while the …
View article: Environmental characteristics of Agulhas rings affect interocean plankton transport
Environmental characteristics of Agulhas rings affect interocean plankton transport Open
Agulhas rings provide the principal route for ocean waters to circulate from the Indo-Pacific to the Atlantic basin. Their influence on global ocean circulation is well known, but their role in plankton transport is largely unexplored. We …