Tim Reska
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View article: Real-time genomic pathogen, resistance, and host range characterization from passive water sampling of wetland ecosystems
Real-time genomic pathogen, resistance, and host range characterization from passive water sampling of wetland ecosystems Open
Wetland ecosystems provide interfaces for the transmission of microbial pathogens and antimicrobial resistances (AMR) between migratory birds, wild and domestic animals, and human populations. The efficient surveillance of wetlands is, how…
View article: Environmental screening through nanopore native sequencing leads to the detection of Batrachochytrium dendrobatidis in La Mandria Regional Park, Italy
Environmental screening through nanopore native sequencing leads to the detection of Batrachochytrium dendrobatidis in La Mandria Regional Park, Italy Open
View article: Improvements in RNA and DNA nanopore sequencing allow for rapid genetic characterization of avian influenza
Improvements in RNA and DNA nanopore sequencing allow for rapid genetic characterization of avian influenza Open
Avian influenza virus (AIV) currently causes a panzootic with extensive mortality in wild birds, poultry, and wild mammals, thus posing a major threat to global health and underscoring the need for efficient monitoring of its distribution …
View article: Nanopore- and AI-empowered microbial viability inference
Nanopore- and AI-empowered microbial viability inference Open
Background The ability to differentiate between viable and dead microorganisms in metagenomic data is crucial for various microbial inferences, ranging from assessing ecosystem functions of environmental microbiomes to inferring the virule…
View article: Detection of hidden antibiotic resistance through real-time genomics
Detection of hidden antibiotic resistance through real-time genomics Open
Real-time genomics through nanopore sequencing holds the promise of fast antibiotic resistance prediction directly in the clinical setting. However, concerns about the accuracy of genomics-based resistance predictions persist, particularly…
View article: Nanopore- and AI-empowered microbial viability inference
Nanopore- and AI-empowered microbial viability inference Open
The ability to differentiate between viable and dead microorganisms in metagenomic data is crucial for various microbial inferences, ranging from assessing ecosystem functions of environmental microbiomes to inferring the virulence of pote…
View article: Latest RNA and DNA nanopore sequencing allows for rapid avian influenza profiling
Latest RNA and DNA nanopore sequencing allows for rapid avian influenza profiling Open
Avian influenza virus (AIV) currently causes a panzootic with extensive mortality in wild birds, poultry, and wild mammals, thus posing a major threat to global health and underscoring the need for efficient monitoring of its distribution …
View article: Air monitoring by nanopore sequencing
Air monitoring by nanopore sequencing Open
While the air microbiome and its diversity are essential for human health and ecosystem resilience, comprehensive air microbial diversity monitoring has remained rare, so that little is known about the air microbiome’s composition, distrib…
View article: Air monitoring by nanopore sequencing
Air monitoring by nanopore sequencing Open
While the air microbiome and its diversity are essential for human health and ecosystem resilience, comprehensive air microbial diversity monitoring has remained rare, so that little is known about the air microbiome’s composition, distrib…
View article: Detection of hidden antibiotic resistance through real-time genomics
Detection of hidden antibiotic resistance through real-time genomics Open
Real-time genomics through nanopore sequencing holds the promise of fast antibiotic resistance prediction, but concerns remain about its accuracy. We here show that real-time genomics has the potential to improve clinical practice based on…
View article: Real‐time genomics for One Health
Real‐time genomics for One Health Open
The ongoing degradation of natural systems and other environmental changes has put our society at a crossroad with respect to our future relationship with our planet. While the concept of One Health describes how human health is inextricab…
View article: Monitoring airborne pathogens by nanopore sequencing
Monitoring airborne pathogens by nanopore sequencing Open
Next generation sequencing technologies have revolutionized the field of environmental science. Widely used short-read sequencing enables accurate microbial identification but is often slow, requires large centralised equipment, and does n…
View article: Real-time metagenomics for rapid clinical pathogen identification and resistance prediction in gram-negative bloodstream infections
Real-time metagenomics for rapid clinical pathogen identification and resistance prediction in gram-negative bloodstream infections Open
Bloodstream infections have become one of the main causes of hospital mortality with an estimated five million deaths per year globally. Recent trends have shown an increase in the proportion of multi-drug resistant gram-negative bacteria …