Timothée Chaumier
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View article: High-quality genome assembly and annotation of Thalassiosira rotula (synonym of Thalassiosira gravida)
High-quality genome assembly and annotation of Thalassiosira rotula (synonym of Thalassiosira gravida) Open
Diatoms are unicellular eukaryotic microorganisms thriving in most aquatic environments thanks to the expression of biosynthetic pathways for secondary metabolites involved in defence and adaptation to environmental changes. The sequencing…
View article: Complete genome sequence of a marine <i>Pseudoalteromonas</i> bacterial strain
Complete genome sequence of a marine <i>Pseudoalteromonas</i> bacterial strain Open
Pseudoalteromonas is an abundant bacterial genera, found ubiquitously, including in extreme environments. Its broad metabolic capacity enables unique associations with various organisms. Using PacBio sequencing, we generated the complete g…
View article: Genomic sequences and annotations of two <i>Pseudomonas</i> species isolated from marine and terrestrial habitats
Genomic sequences and annotations of two <i>Pseudomonas</i> species isolated from marine and terrestrial habitats Open
Here, we present the complete genome sequences and annotations of two species of the Pseudomonas genus isolated from marine and terrestrial environments. Both genomes and their annotations are available on BacBrowse ( https://BacBrowse.uni…
View article: Genome-wide assessment of genetic diversity and transcript variations in 17 accessions of the model diatom <i>Phaeodactylum tricornutum</i>
Genome-wide assessment of genetic diversity and transcript variations in 17 accessions of the model diatom <i>Phaeodactylum tricornutum</i> Open
Diatoms, a prominent group of phytoplankton, have a significant impact on both the oceanic food chain and carbon sequestration, thereby playing a crucial role in regulating the climate. These highly diverse organisms show a wide geographic…
View article: Genome wide assessment of genetic diversity and transcript variations in 17 accessions of the model diatom<i>Phaeodactylum tricornutum</i>
Genome wide assessment of genetic diversity and transcript variations in 17 accessions of the model diatom<i>Phaeodactylum tricornutum</i> Open
Diatoms, a prominent group of phytoplankton, have a significant impact on both the oceanic food chain and carbon sequestration, thereby playing a crucial role in regulating the climate. These highly diverse organisms show a wide geographic…
View article: Combined in vivo and in situ genome-resolved metagenomics reveals novel symbiotic nitrogen fixing interactions between non-cyanobacterial diazotrophs and microalgae
Combined in vivo and in situ genome-resolved metagenomics reveals novel symbiotic nitrogen fixing interactions between non-cyanobacterial diazotrophs and microalgae Open
Non-cyanobacteria diazotrophs (NCDs) were shown to dominate in surface waters shifting the long-held paradigm of cyanobacteria dominance and raising fundamental questions on how these putative heterotrophic bacteria thrive in sunlit oceans…
View article: Non-cyanobacterial diazotrophs from the Rhizobiales order support marine microalgae in nitrogen-depleted environments
Non-cyanobacterial diazotrophs from the Rhizobiales order support marine microalgae in nitrogen-depleted environments Open
Background Non-cyanobacteria diazotrophs (NCDs) were shown to dominate in surface waters shifting the long-held paradigm of cyanobacteria dominance and raising fundamental questions on how these putative heterotrophic bacteria thrive in su…
View article: PhaeoEpiView: An epigenome browser of the newly assembled genome of the model diatom <i>Phaeodactylum tricornutum</i>
PhaeoEpiView: An epigenome browser of the newly assembled genome of the model diatom <i>Phaeodactylum tricornutum</i> Open
Motivation Recent advances in DNA sequencing technologies in particular of long reads type greatly improved genomes assembly leading to discrepancies between both published annotations and epigenome tracks which did not keep pace with new …