Trevor H. Yeats
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View article: Deterministic Formulas and Procedures for Stochastic Trait Introgression Prediction
Deterministic Formulas and Procedures for Stochastic Trait Introgression Prediction Open
Key message We derive formulas for the background noise during trait introgression programs and use these formulas to quickly predict noise for up to five future generations without using simulation. Trait introgression is a common method …
View article: Multi-omics prediction of oat agronomic and seed nutritional traits across environments and in distantly related populations
Multi-omics prediction of oat agronomic and seed nutritional traits across environments and in distantly related populations Open
View article: Apple Ripening Is Controlled by a NAC Transcription Factor
Apple Ripening Is Controlled by a NAC Transcription Factor Open
Softening is a hallmark of ripening in fleshy fruits, and has both desirable and undesirable implications for texture and postharvest stability. Accordingly, the timing and extent of pre-harvest ripening and associated textural changes fol…
View article: Multi-omics Prediction of Oat Agronomic and Seed Nutritional Traits Across Environments and in Distantly Related Populations
Multi-omics Prediction of Oat Agronomic and Seed Nutritional Traits Across Environments and in Distantly Related Populations Open
Key message Integration of multi-omics data improved prediction accuracies of oat agronomic and seed nutritional traits in multi-environment trials and distantly-related populations in addition to the single-environment prediction.Multi-om…
View article: Multi-omics prediction of oat agronomic and seed nutritional traits across environments and in distantly related populations
Multi-omics prediction of oat agronomic and seed nutritional traits across environments and in distantly related populations Open
Multi-omics prediction has been shown to be superior to genomic prediction with genome-wide DNA-based genetic markers (G) for predicting phenotypes. However, most of the existing studies were based on historical datasets from one environme…
View article: Improving Genomic Prediction for Seed Quality Traits in Oat (Avena sativa L.) Using Trait-Specific Relationship Matrices
Improving Genomic Prediction for Seed Quality Traits in Oat (Avena sativa L.) Using Trait-Specific Relationship Matrices Open
The observable phenotype is the manifestation of information that is passed along different organization levels (transcriptional, translational, and metabolic) of a biological system. The widespread use of various omic technologies (RNA-se…
View article: Translating insights from the seed metabolome into improved prediction for lipid-composition traits in oat (<i>Avena sativa</i>L.)
Translating insights from the seed metabolome into improved prediction for lipid-composition traits in oat (<i>Avena sativa</i>L.) Open
Oat (Avena sativa L.) seed is a rich resource of beneficial lipids, soluble fiber, protein, and antioxidants, and is considered a healthful food for humans. Little is known regarding the genetic controllers of variation for these compounds…
View article: Translating insights from the seed metabolome into improved prediction for healthful compounds in oat (<i>Avena sativa L.</i>)
Translating insights from the seed metabolome into improved prediction for healthful compounds in oat (<i>Avena sativa L.</i>) Open
Oat ( Avena sativa L.) seed is a rich resource of beneficial lipids, soluble fiber, protein, and antioxidants, and is considered a healthful food for humans. Despite these characteristics, little is known regarding the genetic controllers …
View article: Buffering Lipid Synthesis by Conditional Inhibition
Buffering Lipid Synthesis by Conditional Inhibition Open
Lipid synthesis is a ubiquitous but costly branch of primary metabolism in plants. All cells must make fatty acids as precursors for cellular membranes and signaling molecules, and some cells make large quantities of fatty acid-derived pro…
View article: Heritable temporal gene expression patterns correlate with metabolomic seed content in developing hexaploid oat seed
Heritable temporal gene expression patterns correlate with metabolomic seed content in developing hexaploid oat seed Open
Summary Oat ranks sixth in world cereal production and has a higher content of health-promoting compounds compared to other cereals. However, there is neither a robust oat reference genome nor transcriptome. Using deeply sequenced full-len…
View article: Apple ripening is controlled by a NAC transcription factor
Apple ripening is controlled by a NAC transcription factor Open
Softening is a hallmark of ripening in fleshy fruits, and has both desirable and undesirable implications for texture and postharvest stability. Accordingly, the timing and extent of ripening and associated textural changes are key targets…
View article: Multivariate Genome-Wide Association Analyses Reveal the Genetic Basis of Seed Fatty Acid Composition in Oat ( <i>Avena sativa</i> L.)
Multivariate Genome-Wide Association Analyses Reveal the Genetic Basis of Seed Fatty Acid Composition in Oat ( <i>Avena sativa</i> L.) Open
Oat (Avena sativa L.) has a high concentration of oils, comprised primarily of healthful unsaturated oleic and linoleic fatty acids. To accelerate oat plant breeding efforts, we sought to identify loci associated with variation in fatty ac…
View article: Multivariate Genome-wide Association Analyses Reveal the Genetic Basis of Seed Fatty Acid Composition in Oat (<i>Avena sativa</i>L.)
Multivariate Genome-wide Association Analyses Reveal the Genetic Basis of Seed Fatty Acid Composition in Oat (<i>Avena sativa</i>L.) Open
Oat ( Avena sativa L.) has a high concentration of oils, comprised primarily of healthful unsaturated oleic and linoleic fatty acids. To accelerate oat plant breeding efforts, we sought to identify loci associated with variation in fatty a…
View article: Setting and Diffusing the Cyanide Bomb in Plant Defense
Setting and Diffusing the Cyanide Bomb in Plant Defense Open
Hydrogen cyanide (HCN) is a potent inhibitor of cytochrome c oxidase, a conserved component of the respiratory electron transport chain in all aerobic life. Thus, HCN is well suited to serve as a broad-spectrum chemical defense, and indeed…
View article: Subcellular Spice Trade Routes: Crocin Biosynthesis in the Saffron Crocus (<i>Crocus sativus</i>)
Subcellular Spice Trade Routes: Crocin Biosynthesis in the Saffron Crocus (<i>Crocus sativus</i>) Open
Saffron is produced from the stigmas and styles of Crocus sativus flowers and is one of the most expensive spices. In C. sativus , both stigma and style are intensely crimson red in color due to the presence of three major classes of apoca…
View article: Fruit Softening: Revisiting the Role of Pectin
Fruit Softening: Revisiting the Role of Pectin Open
View article: A dual mechanism of cellulose deficiency in <i>shv3svl1</i>
A dual mechanism of cellulose deficiency in <i>shv3svl1</i> Open
SHAVEN3 (SHV3) and its homolog SHAVEN3-like 1 (SVL1) encode glycosylphosphatidylinositol (GPI)-anchored proteins (GAPs) that are involved in cellulose biosynthesis and hypocotyl elongation in Arabidopsis thaliana. In a recent report, we sh…
View article: Cellulose Deficiency Is Enhanced on Hyper Accumulation of Sucrose by a H<sup>+</sup>-Coupled Sucrose Symporter
Cellulose Deficiency Is Enhanced on Hyper Accumulation of Sucrose by a H<sup>+</sup>-Coupled Sucrose Symporter Open
In order to understand factors controlling the synthesis and deposition of cellulose, we have studied the Arabidopsis (Arabidopsis thaliana) double mutant shaven3 shaven3-like1 (shv3svl1), which was shown previously to exhibit a marked cel…