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View article: Human microbiota drives hospital-associated antimicrobial resistance dissemination in the urban environment and mirrors patient case rates
Human microbiota drives hospital-associated antimicrobial resistance dissemination in the urban environment and mirrors patient case rates Open
Background The microbial community composition of urban environments is primarily determined by human activity. The use of metagenomics to explore how microbial communities are shaped in a city provides a novel input that can improve decis…
View article: Human microbiota drives hospital-associated antimicrobial resistance dissemination in the urban environment and mirrors patient case rates
Human microbiota drives hospital-associated antimicrobial resistance dissemination in the urban environment and mirrors patient case rates Open
Background: The microbial community composition of urban environments is primarily determined by human activity. The use of metagenomics to explore how microbial communities are shaped in a city provides a novel input that can improve deci…
View article: Metagenomic strategies identify diverse integron‐integrase and antibiotic resistance genes in the Antarctic environment
Metagenomic strategies identify diverse integron‐integrase and antibiotic resistance genes in the Antarctic environment Open
The objective of this study is to identify and analyze integrons and antibiotic resistance genes (ARGs) in samples collected from diverse sites in terrestrial Antarctica. Integrons were studied using two independent methods. One involved t…
View article: Urban metagenomics uncover antibiotic resistance reservoirs in coastal beach and sewage waters
Urban metagenomics uncover antibiotic resistance reservoirs in coastal beach and sewage waters Open
Our study represents the first in using metagenomics to jointly analyze beaches and the sewage system from an entire city, allowing us to characterize antibiotic-resistant pathogens circulating in urban waters. The data generated in this i…
View article: Additional file 3: of Urban metagenomics uncover antibiotic resistance reservoirs in coastal beach and sewage waters
Additional file 3: of Urban metagenomics uncover antibiotic resistance reservoirs in coastal beach and sewage waters Open
Metagenomic assembly statistics. (XLSX 8 kb)
View article: Additional file 2: of Urban metagenomics uncover antibiotic resistance reservoirs in coastal beach and sewage waters
Additional file 2: of Urban metagenomics uncover antibiotic resistance reservoirs in coastal beach and sewage waters Open
Distribution of antibioitic resistance genes per sample. (XLSX 142 kb)
View article: City-wide metagenomics uncover antibiotic resistance reservoirs in urban beach and sewage waters
City-wide metagenomics uncover antibiotic resistance reservoirs in urban beach and sewage waters Open
Background Microbial communities present in environmental waters constitute a reservoir for antibiotic-resistant pathogens that impact human health. For this reason a diverse variety of water environments are being analyzed using metagenom…
View article: First Release of the Bacterial Biobank of the Urban Environment (BBUE)
First Release of the Bacterial Biobank of the Urban Environment (BBUE) Open
Metagenomics is providing a broad overview of bacterial functional diversity; however, culturing and biobanking are still essential for microbiology. Here, we present the Bacterial Biobank of the Urban Environment (BBUE), a sizable culture…