Viktor Perets
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View article: SNiPgenie: a tool for microbial SNP site detection from whole-genome sequencing data
SNiPgenie: a tool for microbial SNP site detection from whole-genome sequencing data Open
Whole-genome sequencing (WGS) of microbial pathogens provides a high-resolution approach to antibiotic resistance profiling, lineage classification and outbreak surveillance. Identification of SNPs across the genome by alignment against a …
View article: Transcriptional comparison between the PhoPR system of Mycobacterium tuberculosis and Mycobacterium bovis on an M. bovis AF2122/97 genetic background
Transcriptional comparison between the PhoPR system of Mycobacterium tuberculosis and Mycobacterium bovis on an M. bovis AF2122/97 genetic background Open
Tuberculosis (TB) is an infectious disease that affects humans and animals. The pathogens that cause TB belong to the Mycobacterium tuberculosis Complex (MTBC), with Mycobacterium tuberculosis and Mycobacterium bovis as the main representa…
View article: SNiPgenie: A tool for microbial SNP site detection from whole genome sequencing data
SNiPgenie: A tool for microbial SNP site detection from whole genome sequencing data Open
Whole-genome sequencing (WGS) of microbial pathogens provides a high-resolution approach to antibiotic resistance profiling, lineage classification, and outbreak surveillance. Identification of single nucleotide polymorphisms (SNPs) across…
View article: SNiPgenie: A tool for microbial SNP site detection from whole genome sequencing data
SNiPgenie: A tool for microbial SNP site detection from whole genome sequencing data Open
Whole-genome sequencing (WGS) of microbial pathogens provides a high-resolution approach to antibiotic resistance profiling, lineage classification, and outbreak surveillance. Identification of single nucleotide polymorphisms (SNPs) across…
View article: Isolation and genetic analysis of mycobacteria from suspect tuberculous lesions in slaughtered cattle from Wolaita, Ethiopia
Isolation and genetic analysis of mycobacteria from suspect tuberculous lesions in slaughtered cattle from Wolaita, Ethiopia Open
Bovine tuberculosis (bTB), caused by Mycobacterium bovis and other members of the Mycobacterium tuberculosis complex (MTBC), is a significant concern for livestock and public health in Ethiopia. This study aimed to isolate and genetically …
View article: Isolation and genetic analysis of mycobacteria from suspect tuberculous lesions in slaughtered cattle from Wolaita, Ethiopia
Isolation and genetic analysis of mycobacteria from suspect tuberculous lesions in slaughtered cattle from Wolaita, Ethiopia Open
Bovine tuberculosis (bTB), caused by Mycobacterium bovis and other members of the Mycobacterium tuberculosis complex (MTBC), is a significant concern for livestock and public health in Ethiopia. This study aimed to isolate and genetically …
View article: Isolation and genetic analysis of mycobacteria from suspect tuberculous lesions in slaughtered cattle from Wolaita, Ethiopia
Isolation and genetic analysis of mycobacteria from suspect tuberculous lesions in slaughtered cattle from Wolaita, Ethiopia Open
Bovine tuberculosis (bTB), caused by Mycobacterium bovis and other members of the Mycobacterium tuberculosis complex (MTBC), is a significant concern for livestock and public health in Ethiopia. This study aimed to isolate and genetically …
View article: Supplementary Files for PhD Thesis VP
Supplementary Files for PhD Thesis VP Open
These are a collection of supplementary files and materials accompanying my thesis entitled "The application of whole genome sequencing approaches to elucidate the genetic structure, phylogeny, and infection dynamics of Mycobacterium avium…
View article: Supplementary Files for PhD Thesis VP
Supplementary Files for PhD Thesis VP Open
These are a collection of supplementary files and materials accompanying my thesis entitled "The application of whole genome sequencing approaches to elucidate the genetic structure, phylogeny, and infection dynamics of Mycobacterium avium…
View article: Evidence for local and international spread of Mycobacterium avium subspecies paratuberculosis through whole genome sequencing of isolates from the island of Ireland
Evidence for local and international spread of Mycobacterium avium subspecies paratuberculosis through whole genome sequencing of isolates from the island of Ireland Open
We describe application of whole genome sequencing (WGS) to a collection of 197 Mycobacterium avium subsp paratuberculosis (MAP) isolates gathered from 122 cattle herds across 27 counties of the island of Ireland. We compare WGS to MAP div…
View article: Whole genome sequencing reveals genetic diversity in Mycobacterium avium subspecies paratuberculosis population circulating in Irish cattle
Whole genome sequencing reveals genetic diversity in Mycobacterium avium subspecies paratuberculosis population circulating in Irish cattle Open
Mycobacterium avium subspecies paratuberculosis (MAP) causes Johne’s Disease (JD), a chronic enteritis, in cattle. Whole genome sequencing (WGS) has been applied to many pathogen systems, where its unprecedented resolution has greatly enha…