Viktor Senderov
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View article: Phylogenetic Insights into Diversification
Phylogenetic Insights into Diversification Open
Species diversification—the balance between speciation and extinction—is fundamental to our understanding of how species richness varies in space and time and throughout the Tree of Life. Phylogenetic approaches provide insights into speci…
View article: TreePPL: A Universal Probabilistic Programming Language for Phylogenetics
TreePPL: A Universal Probabilistic Programming Language for Phylogenetics Open
We present TreePPL, a universal probabilistic programming language (PPL) designed for probabilistic modeling and inference in phylogenetics. In TreePPL, the model is expressed as a computer program, which can generate simulations from the …
View article: Bush-crickets show lifelong flexibility in courtship signals to match predation threat
Bush-crickets show lifelong flexibility in courtship signals to match predation threat Open
The conflicting selection pressures of advertising to conspecifics and inadvertently advertising to predators has direct fitness consequences. It is unclear, however, how signalling prey species balance costs and benefits of those vital ta…
View article: Universal Probabilistic Programming Language Compilation with Parallel Efficient Sequential Monte Carlo Inference.
Universal Probabilistic Programming Language Compilation with Parallel Efficient Sequential Monte Carlo Inference. Open
Probabilistic programming languages (PPLs) allow for natural encoding of arbitrary inference problems, and PPL implementations can provide automatic general-purpose inference for these problems. However, constructing inference implementati…
View article: Infrastructure and Population of the OpenBiodiv Biodiversity Knowledge Graph
Infrastructure and Population of the OpenBiodiv Biodiversity Knowledge Graph Open
OpenBiodiv is a biodiversity knowledge graph containing a synthetic linked open dataset, OpenBiodiv-LOD, which combines knowledge extracted from academic literature with the taxonomic backbone used by the Global Biodiversity Information Fa…
View article: OpenBiodiv Archive
OpenBiodiv Archive Open
OpenBiodiv is a Knowledge Graph for Literature-Extracted Linked Open Data in Biodiversity Science [1] and is available via http://openbiodiv.net . This data publication contains a single gzipped rdf/nquads archive of all of the OpenBiodiv …
View article: OpenBiodiv Archive
OpenBiodiv Archive Open
OpenBiodiv is a Knowledge Graph for Literature-Extracted Linked Open Data in Biodiversity Science [1] and is available via http://openbiodiv.net . This data publication contains a single gzipped rdf/nquads archive of all of the OpenBiodiv …
View article: Publisher Correction: Universal probabilistic programming offers a powerful approach to statistical phylogenetics
Publisher Correction: Universal probabilistic programming offers a powerful approach to statistical phylogenetics Open
A Correction to this paper has been published: https://doi.org/10.1038/s42003-021-01922-8
View article: OpenBiodiv Archive
OpenBiodiv Archive Open
OpenBiodiv is a Knowledge Graph for Literature-Extracted Linked Open Data in Biodiversity Science [1] and is available via http://openbiodiv.net . This data publication contains a single gzipped rdf/nquads archive of all of the OpenBiodiv …
View article: OpenBiodiv Archive
OpenBiodiv Archive Open
OpenBiodiv is a Knowledge Graph for Literature-Extracted Linked Open Data in Biodiversity Science [1] and is available via http://openbiodiv.net . This data publication contains a single gzipped rdf/nquads archive of all of the OpenBiodiv …
View article: OpenBiodiv Archive
OpenBiodiv Archive Open
OpenBiodiv is a Knowledge Graph for Literature-Extracted Linked Open Data in Biodiversity Science [1] and is available via http://openbiodiv.net . This data publication contains a single gzipped rdf/nquads archive of all of the OpenBiodiv …
View article: OpenBiodiv: Linking Type Materials, Institutions, Locations and Taxonomic Names Extracted From Scholarly Literature
OpenBiodiv: Linking Type Materials, Institutions, Locations and Taxonomic Names Extracted From Scholarly Literature Open
OpenBiodiv is a knowledge management system containing biodiversity knowledge extracted from scholarly literature: both recently published articles in Pensoft's journals and legacy (taxon treatments extracted by Plazi) (Senderov et al. 201…
View article: The Pensoft Data Publishing Workflow: The FAIRway from articles to Linked Open Data
The Pensoft Data Publishing Workflow: The FAIRway from articles to Linked Open Data Open
As one of the first advocates of open access and open data in the field of biodiversity publishiing, Pensoft has adopted a multiple data publishing model, resulting in the ARPHA-BioDiv toolbox (Penev et al. 2017). ARPHA-BioDiv consists of …
View article: OpenBiodiv-O Ontology: Bridging the Gap Between Biodiversity Data and Biodiversity Publishing
OpenBiodiv-O Ontology: Bridging the Gap Between Biodiversity Data and Biodiversity Publishing Open
Communication of research findings is the last and arguably the most influential step of the scientific process. This is especially true for biodiversity science, in which new species descriptions and introduction of new taxonomic names ha…
View article: OpenBiodiv: A Knowledge Graph for Literature-Extracted Linked Open Data in Biodiversity Science
OpenBiodiv: A Knowledge Graph for Literature-Extracted Linked Open Data in Biodiversity Science Open
Hundreds of years of biodiversity research have resulted in the accumulation of a substantial pool of communal knowledge; however, most of it is stored in silos isolated from each other, such as published articles or monographs. The need f…
View article: The Open Biodiversity Knowledge Management (eco-)System: Tools and Services for Extraction, Mobilization, Handling and Re-use of Data from the Published Literature
The Open Biodiversity Knowledge Management (eco-)System: Tools and Services for Extraction, Mobilization, Handling and Re-use of Data from the Published Literature Open
The Open Biodiversity Knowledge Management System (OBKMS) is an end-to-end, eXtensible Markup Language (XML)- and Linked Open Data (LOD)-based ecosystem of tools and services that encompasses the entire process of authoring, submission, re…
View article: Additional file 2 of OpenBiodiv-O: ontology of the OpenBiodiv knowledge management system
Additional file 2 of OpenBiodiv-O: ontology of the OpenBiodiv knowledge management system Open
Vocabulary of Taxonomic Statuses is a plain text file containing statements in the Turtle syntax forming the OpenBiodiv Vocabulary of Taxonomic Statuses. Like the ontology [Additional file 1] it can be edited in a text or ontology editor o…
View article: Additional file 3 of OpenBiodiv-O: ontology of the OpenBiodiv knowledge management system
Additional file 3 of OpenBiodiv-O: ontology of the OpenBiodiv knowledge management system Open
RCC-5 Vocabulary is a plain text file containing statements in the Turtle syntax forming the OpenBiodiv RCC-5 Vocabulary. Like the ontology [Additional file 1] it can be edited in a text or ontology editor or loaded in a triple store. Make…
View article: Additional file 1 of OpenBiodiv-O: ontology of the OpenBiodiv knowledge management system
Additional file 1 of OpenBiodiv-O: ontology of the OpenBiodiv knowledge management system Open
Ontology is a plain text file containing statements in the Turtle syntax forming OpenBiodiv-O. It can be edited in a text (e.g. Sublime Text, Emacs, etc.) or in an ontology editor (e.g. ProtĂŠgĂŠ). It can be loaded it into a triple store (…
View article: OpenBiodiv Poster: an Implementation of a Semantic System Running on top of the Biodiversity Knowledge Graph
OpenBiodiv Poster: an Implementation of a Semantic System Running on top of the Biodiversity Knowledge Graph Open
We present OpenBiodiv - an implementation of the Open Biodiversity Knowledge Management System. The need for an integrated information system serving the needs of the biodiversity community can be dated at least as far back as the sanction…
View article: OpenBiodiv Computer Demo: an Implementation of a Semantic System Running on top of the Biodiversity Knowledge Graph
OpenBiodiv Computer Demo: an Implementation of a Semantic System Running on top of the Biodiversity Knowledge Graph Open
We present OpenBiodiv - an implementation of the Open Biodiversity Knowledge Management System. We believe OpenBiodiv is possibly the first pilot-stage implenatation of a semantic system running on top of the biodiversity knowledge graph. …
View article: OpenBiodiv: an Implementaion of a Semantic System Running on top of the Biodiversity Knowledge Graph
OpenBiodiv: an Implementaion of a Semantic System Running on top of the Biodiversity Knowledge Graph Open
Volume: 1
View article: A Review Of The Cercyon (Coleoptera: Hydrophilidae: Sphaeridiinae) Of The Greater Antilles
A Review Of The Cercyon (Coleoptera: Hydrophilidae: Sphaeridiinae) Of The Greater Antilles Open
The representatives of the genus Cercyon Leach occurring in the Greater Antilles are reviewed. Ten species are recorded, of which five are described here as new: C. gimmeli sp. nov. (Dominican Republic), C. armatipenis sp. nov. (Dominican …
View article: A Review Of The Cercyon (Coleoptera: Hydrophilidae: Sphaeridiinae) Of The Greater Antilles
A Review Of The Cercyon (Coleoptera: Hydrophilidae: Sphaeridiinae) Of The Greater Antilles Open
The representatives of the genus Cercyon Leach occurring in the Greater Antilles are reviewed. Ten species are recorded, of which five are described here as new: C. gimmeli sp. nov. (Dominican Republic), C. armatipenis sp. nov. (Dominican …
View article: A review of the Cercyon Leach (Coleoptera, Hydrophilidae, Sphaeridiinae) of the Greater Antilles
A review of the Cercyon Leach (Coleoptera, Hydrophilidae, Sphaeridiinae) of the Greater Antilles Open
The representatives of the genus Cercyon Leach occurring in the Greater Antilles are reviewed. Ten species are recorded, of which five are described here as new: C. gimmeli sp. n. (Dominican Republic), C. armatipenis sp. n. (Dominican Repu…