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View article: Editorial: Coastal rewilding as a nature-based solution
Editorial: Coastal rewilding as a nature-based solution Open
View article: Mapping intertidal mudflat gross primary production (GPP) by hyperspectral imagery, coupling with atmospheric CO2 fluxes at varied temporal and spatial scales: from the lab to the ecosystem level, through the seasons.
Mapping intertidal mudflat gross primary production (GPP) by hyperspectral imagery, coupling with atmospheric CO2 fluxes at varied temporal and spatial scales: from the lab to the ecosystem level, through the seasons. Open
Intertidal mudflats, present all over the world are excluded from global carbon budget calculation; while these ecosystems are increasingly recognized to be as productive as tropical forests. With an annual global productivity estimated to…
View article: Tidal Flat Gross Primary Production Mapping Using Hyperspectral Remote Sensing: A Mesoscale Approach to Constrain New Radiometric Indices
Tidal Flat Gross Primary Production Mapping Using Hyperspectral Remote Sensing: A Mesoscale Approach to Constrain New Radiometric Indices Open
View article: Identification of microbial exopolymer producers in sandy and muddy intertidal sediments by compound-specific isotope analysis
Identification of microbial exopolymer producers in sandy and muddy intertidal sediments by compound-specific isotope analysis Open
Extracellular polymeric substances (EPS) refer to a wide variety of high molecular weight molecules secreted outside the cell membrane by biofilm microorganisms. In the present study, EPS from marine microphytobenthic biofilms were extract…
View article: Identification of microbial exopolymer producers in sandy and muddy intertidal sediments by compound-specific isotope analysis
Identification of microbial exopolymer producers in sandy and muddy intertidal sediments by compound-specific isotope analysis Open
Extracellular polymeric substances (EPS) refer to a wide variety of high molecular weight molecules secreted outside the cell membrane by biofilm microorganisms. In the present study, EPS from marine microphytobenthic biofilms were extract…
View article: Identification of microbial exopolymer producers in sandy and muddy intertidal sediments by compound-specific isotope analysis.
Identification of microbial exopolymer producers in sandy and muddy intertidal sediments by compound-specific isotope analysis. Open
This dataset supports the paper entitled Identification of microbial exopolymer producers in sandy and muddy intertidal sediments by compound-specific isotope analysis.
View article: Identification of microbial exopolymer producers in sandy and muddy intertidal sediments by compound-specific isotope analysis.
Identification of microbial exopolymer producers in sandy and muddy intertidal sediments by compound-specific isotope analysis. Open
<p>This dataset supports the version 2 of the paper entitled <em>Identification of microbial exopolymer producers in sandy and muddy intertidal sediments by compound-specific isotope analysis :</em></p>\n<p>&l…
View article: Identification of microbial exopolymer producers in sandy and muddy intertidal sediments by compound-specific isotope analysis.
Identification of microbial exopolymer producers in sandy and muddy intertidal sediments by compound-specific isotope analysis. Open
This dataset supports the version 2 of the paper entitled Identification of microbial exopolymer producers in sandy and muddy intertidal sediments by compound-specific isotope analysis : Hubas, Cédric; Gaubert-Boussarie, Julie; D’Hondt, An…
View article: A Machine-Learning Approach to Intertidal Mudflat Mapping Combining Multispectral Reflectance and Geomorphology from UAV-Based Monitoring
A Machine-Learning Approach to Intertidal Mudflat Mapping Combining Multispectral Reflectance and Geomorphology from UAV-Based Monitoring Open
Remote sensing is a relevant method to map inaccessible areas, such as intertidal mudflats. However, image classification is challenging due to spectral similarity between microphytobenthos and oyster reefs. Because these elements are stro…
View article: Trophic strategies of intertidal foraminifera explored with single‐cell microbiome metabarcoding and morphological methods: What is on the menu?
Trophic strategies of intertidal foraminifera explored with single‐cell microbiome metabarcoding and morphological methods: What is on the menu? Open
In mudflats, interactions and transfers of nutrients and secondary metabolites may drive ecosystems and biodiversity. Foraminifera have complex trophic strategies as they often rely on bacteria and eukaryotes or on potential symbionts for …
View article: Data for: Extensive spatial impacts of oyster reefs on an intertidal mudflat community via predator facilitation
Data for: Extensive spatial impacts of oyster reefs on an intertidal mudflat community via predator facilitation Open
Datasets supporting the figures presented in the manuscript.
View article: Multiscale analysis of living benthic foraminiferal heterogeneity: Ecological advances from an intertidal mudflat (Loire estuary, France)
Multiscale analysis of living benthic foraminiferal heterogeneity: Ecological advances from an intertidal mudflat (Loire estuary, France) Open
View article: Marine and brackish Luticola D.G.Mann (Bacillariophyta) species from the Java Sea and South China Sea coasts with the description of three new species
Marine and brackish Luticola D.G.Mann (Bacillariophyta) species from the Java Sea and South China Sea coasts with the description of three new species Open
In this study, samples were collected from the Java Sea coasts, from the South China Sea in Hainan Island coasts and Quảng Yên region and Rú Chá mangrove near Hue in Central Vietnam. In studied samples a total of eight Luticola species hav…
View article: Potential Impact of Photoinhibition on Microphytobenthic Primary Production on a Large Intertidal Mudflat
Potential Impact of Photoinhibition on Microphytobenthic Primary Production on a Large Intertidal Mudflat Open
Microphytobenthos (MPB) are a key primary producer of intertidal mudflats. MPB face strong variability in incident irradiance during low tides. Despite photoprotection and photoacclimation, such variations can translate into the photoinhib…
View article: Climat et biodiversité : co-construire des problématiques intégrées pour répondre aux enjeux de l'espace marin (Ecole thématique CNRS Horizon 2030-Océan, juin 2021): Notices d'experts - Livrables (version abrégée)
Climat et biodiversité : co-construire des problématiques intégrées pour répondre aux enjeux de l'espace marin (Ecole thématique CNRS Horizon 2030-Océan, juin 2021): Notices d'experts - Livrables (version abrégée) Open
Notices rédigées par les participants aux ateliers de l'Ecole
View article: Metadata standards and practical guidelines for specimen and DNA curation when building barcode reference libraries for aquatic life
Metadata standards and practical guidelines for specimen and DNA curation when building barcode reference libraries for aquatic life Open
DNA barcoding and metabarcoding is increasingly used to effectively and precisely assess and monitor biodiversity in aquatic ecosystems. As these methods rely on data availability and quality of barcode reference libraries, it is important…
View article: Spatio-temporal variation of microphytobenthos biomass, diversity and assemblage structure in the Loire Estuary, France
Spatio-temporal variation of microphytobenthos biomass, diversity and assemblage structure in the Loire Estuary, France Open
International audience
View article: Marine and brackish Luticola D. G. Mann (Bacillariophyta) species from the Java Sea and South China Sea coasts with the description of three new species
Marine and brackish Luticola D. G. Mann (Bacillariophyta) species from the Java Sea and South China Sea coasts with the description of three new species Open
This dataset contains the digitized treatments in Plazi based on the original journal article Rybak, Mateusz, Witkowski, Andrzej, Peszek, Lukasz, Kociolek, John P., Risjani, Yenny, Nguyen, Duc Hung, Zhang, Jinpeng, Yunianta,, Nguyen, Van D…
View article: Editorial: Advances and Challenges in Microphytobenthos Research: From Cell Biology to Coastal Ecosystem Function
Editorial: Advances and Challenges in Microphytobenthos Research: From Cell Biology to Coastal Ecosystem Function Open
Thanks are due to FCT/MCTES for the financial support to CESAM (UIDP/50017/2020 + UIDB/50017/2020), through national funds, to JS, and to the NERC Blue-coast project to DMP (NE/N016009/1).
View article: Mapping the Intertidal Microphytobenthos Gross Primary Production, Part II: Merging Remote Sensing and Physical-Biological Coupled Modeling
Mapping the Intertidal Microphytobenthos Gross Primary Production, Part II: Merging Remote Sensing and Physical-Biological Coupled Modeling Open
Microphytobenthos (MPB) at the sediment surface of intertidal mudflats are known to show a high spatial and temporal variability in response to the biotic and abiotic conditions prevailing at the mud surface. It makes long-term and large-s…
View article: Mapping the Intertidal Microphytobenthos Gross Primary Production Part I: Coupling Multispectral Remote Sensing and Physical Modeling
Mapping the Intertidal Microphytobenthos Gross Primary Production Part I: Coupling Multispectral Remote Sensing and Physical Modeling Open
The gross primary production (GPP) of intertidal mudflat microphytobenthos supports important ecosystem services such as shoreline stabilization and food production, and it contributes to blue carbon. However, monitoring microphytobenthos …
View article: Mapping the intertidal microphytobenthos Gross Primary Production
Mapping the intertidal microphytobenthos Gross Primary Production Open
Dataset used in the papers "Mapping the intertidal microphytobenthos Gross Primary Production. PartI & PartII" published in Frontiers Marine Science Research Topic "Advances and Challenges in Microphytobenthos Research: From Cell Biology t…
View article: Mapping the intertidal microphytobenthos Gross Primary Production
Mapping the intertidal microphytobenthos Gross Primary Production Open
Dataset used in the papers "Mapping the intertidal microphytobenthos Gross Primary Production. PartI & PartII" published in Frontiers Marine Science Research Topic "Advances and Challenges in Microphytobenthos Research: From Cell Biology t…
View article: The Vertical Migratory Rhythm of Intertidal Microphytobenthos in Sediment Depends on the Light Photoperiod, Intensity, and Spectrum: Evidence for a Positive Effect of Blue Wavelengths
The Vertical Migratory Rhythm of Intertidal Microphytobenthos in Sediment Depends on the Light Photoperiod, Intensity, and Spectrum: Evidence for a Positive Effect of Blue Wavelengths Open
Estuarine intertidal flats strong biological productivity is mainly based on the activity of benthic microalgae communities or microphytobenthos (MPB), mostly dominated by diatoms. Epipelon is a major MPB growth form comprising motile spec…
View article: Effects of light and nitrogen availability on photosynthetic efficiency and fatty acid content of three original benthic diatom strains
Effects of light and nitrogen availability on photosynthetic efficiency and fatty acid content of three original benthic diatom strains Open
Microalgal biotechnology has gained considerable importance in recent decades. Applications range from simple biomass production for food and animal feed to valuable products for fuel, pharmaceuticals, health, biomolecules and materials re…
View article: Typification of the first recognized blue pigmented diatom, Haslea ostrearia (Bacillariophyceae)
Typification of the first recognized blue pigmented diatom, Haslea ostrearia (Bacillariophyceae) Open
Background and aims – The blue pigmented diatom, Haslea ostrearia (Gaillon) Simonsen, which has been the material object for many physiological and ecological studies, was first described from oyster ponds in France as Vibrio ostrearius Ga…
View article: Microphytobenthos Biomass and Diversity Mapping at Different Spatial Scales with a Hyperspectral Optical Model
Microphytobenthos Biomass and Diversity Mapping at Different Spatial Scales with a Hyperspectral Optical Model Open
This work is an extension of the MicroPhytoBenthos Optical Model (MPBOM) workflow. The model was based on the observation that the biofilm itself has a negligible inherent reflectance and can be described solely by the ratio between its ap…
View article: Satellite remote sensing reveals a positive impact of living oyster reefs on microalgal biofilm development
Satellite remote sensing reveals a positive impact of living oyster reefs on microalgal biofilm development Open
Satellite remote sensing (RS) is routinely used for the large-scale monitoring of microphytobenthos (MPB) biomass in intertidal mudflats and has greatly improved our knowledge of MPB spatio-temporal variability and its potential drivers. P…
View article: The BIO-Tide project: The role of microbial biodiversity in the functioning of marine tidal flat sediments
The BIO-Tide project: The role of microbial biodiversity in the functioning of marine tidal flat sediments Open
View article: BIO-Tide: an international collaboration to tackle the complexity of marine tidal flats
BIO-Tide: an international collaboration to tackle the complexity of marine tidal flats Open