Weindl, Daniel
YOU?
Author Swipe
View article: PEtab-GUI: A graphical user interface to create, edit and inspect PEtab parameter estimation problems
PEtab-GUI: A graphical user interface to create, edit and inspect PEtab parameter estimation problems Open
Motivation: Parameter estimation is a cornerstone of data-driven modeling in systems biology. Yet, constructing such problems in a reproducible and accessible manner remains challenging. The PEtab format has established itself as a powerfu…
View article: PEtab-GUI: A graphical user interface to create, edit and inspect PEtab parameter estimation problems
PEtab-GUI: A graphical user interface to create, edit and inspect PEtab parameter estimation problems Open
Motivation: Parameter estimation is a cornerstone of data-driven modeling in systems biology. Yet, constructing such problems in a reproducible and accessible manner remains challenging. The PEtab format has established itself as a powerfu…
View article: pyPESTO - Parameter EStimation TOolbox for python
pyPESTO - Parameter EStimation TOolbox for python Open
General Require Python >=3.11 (#1585) Documentation Updated references and citations (#1601, #1609, #1612) Various minor Documentation and Example fixes Optimization update scipy interface (#1588) Ensemble accurate cutoff based on chi2 dis…
View article: Fides
Fides Open
upgraded black/isort to ruff and applied to all files removed init_with_hess argument from hessian approximation schemes in favour of a hess0 argument in Optimizer.minimize that also accepts custom numeric arrays.
View article: Fides
Fides Open
removed setup.cfg in favor of pyproject.toml updated pre-commit and run on all files fixes a bug where minimize does not respect preinitialization of hessian_update
View article: Fides
Fides Open
removed setup.cfg in favor of pyproject.toml updated pre-commit and run on all files fixes a bug where minimize does not respect preinitialization of hessian_update