Wenfeng Pei
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Author Swipe
View article: Deciphering the dynamic expression network of fiber elongation and the functional role of the GhTUB5 gene for fiber length in cotton based on an introgression population of upland cotton
Deciphering the dynamic expression network of fiber elongation and the functional role of the GhTUB5 gene for fiber length in cotton based on an introgression population of upland cotton Open
This study opens a new avenue to dissect functional mechanism of cotton fiber elongation. Our findings provide some molecular details on how GhTUB5 mediates the FL phenotype in cotton.
View article: Genome-wide analysis of HACD family genes and functional characterization of GhHACD2 for very long chain fatty acids biosynthesis in Gossypium hirsutum
Genome-wide analysis of HACD family genes and functional characterization of GhHACD2 for very long chain fatty acids biosynthesis in Gossypium hirsutum Open
Cotton ( Gossypium spp.) not only serves as a primary textile fiber crop but also as a vital oilseed crop. It stands as the world’s fifth-largest oil crop and is rich in essential fatty acids. At present, the mechanisms underlying the bios…
View article: Sphingosine Promotes Fiber Early Elongation in Upland Cotton
Sphingosine Promotes Fiber Early Elongation in Upland Cotton Open
Sphingolipids play an important role in cotton fiber development, but the regulatory mechanism is largely unclear. We found that serine palmitoyltransferase (SPT) enzyme inhibitors, myriocin and sphingosine (dihydrosphingosine (DHS) and ph…
View article: Genomic and co-expression network analyses reveal candidate genes for oil accumulation based on an introgression population in Upland cotton (Gossypium hirsutum)
Genomic and co-expression network analyses reveal candidate genes for oil accumulation based on an introgression population in Upland cotton (Gossypium hirsutum) Open
Cotton is an economical source of edible oil for the food industry. The genetic mechanism that regulates oil biosynthesis in cottonseeds is essential for the genetic enhancement of oil content (OC). To explore the functional genomics of OC…
View article: Analysis of the main effect clustering and decision-making coefficients for F2 generation of upland cotton in Southern Xinjiang
Analysis of the main effect clustering and decision-making coefficients for F2 generation of upland cotton in Southern Xinjiang Open
Yield and fibre quality traits respectively accounting for 4 and 5 of their 278 varieties (lines) and their 784 F 2 crosses of upland cotton were for their additive and dominance effects by a genetic model comprising additive, dominance an…
View article: Expressed genes and their new alleles identification during fibre elongation reveal the genetic factors underlying improvements of fibre length in cotton
Expressed genes and their new alleles identification during fibre elongation reveal the genetic factors underlying improvements of fibre length in cotton Open
Summary Interspecific breeding in cotton takes advantage of genetic recombination among desirable genes from different parental lines. However, the expression new alleles (ENAs) from crossovers within genic regions and their significance i…
View article: Quantitative Trait Locus Analysis and Identification of Candidate Genes Affecting Seed Size and Shape in an Interspecific Backcross Inbred Line Population of Gossypium hirsutum × Gossypium barbadense
Quantitative Trait Locus Analysis and Identification of Candidate Genes Affecting Seed Size and Shape in an Interspecific Backcross Inbred Line Population of Gossypium hirsutum × Gossypium barbadense Open
Seed size and shape are key agronomic traits affecting seedcotton yield and seed quality in cotton ( Gossypium spp.). However, the genetic mechanisms that regulate the seed physical traits in cotton are largely unknown. In this study, an i…
View article: Genetics, Breeding and Genetic Engineering to Improve Cottonseed Oil and Protein: A Review
Genetics, Breeding and Genetic Engineering to Improve Cottonseed Oil and Protein: A Review Open
Upland cotton ( Gossypium hirsutum ) is the world’s leading fiber crop and one of the most important oilseed crops. Genetic improvement of cotton has primarily focused on fiber yield and quality. However, there is an increased interest and…
View article: Genome-Wide Analysis of the GW2-Like Genes in Gossypium and Functional Characterization of the Seed Size Effect of GhGW2-2D
Genome-Wide Analysis of the GW2-Like Genes in Gossypium and Functional Characterization of the Seed Size Effect of GhGW2-2D Open
Cotton is one of the most economically important crops worldwide. Seed size is a vital trait for plants connected with yield and germination. GW2 encodes a RING_Ubox E3 ubiquitin ligase that controls seed development by affecting cell grow…
View article: Linkage and association analyses reveal that hub genes in energy-flow and lipid biosynthesis pathways form a cluster in upland cotton
Linkage and association analyses reveal that hub genes in energy-flow and lipid biosynthesis pathways form a cluster in upland cotton Open
Upland cotton is an important allotetraploid crop that provides both natural fiber for the textile industry and edible vegetable oil for the food or feed industry. To better understand the genetic mechanism that regulates the biosynthesis …
View article: Quantitative Trait Locus Analysis and Identification of Candidate Genes for Micronaire in an Interspecific Backcross Inbred Line Population of Gossypium hirsutum × Gossypium barbadense
Quantitative Trait Locus Analysis and Identification of Candidate Genes for Micronaire in an Interspecific Backcross Inbred Line Population of Gossypium hirsutum × Gossypium barbadense Open
Cotton is the most important fiber crop and provides indispensable natural fibers for the textile industry. Micronaire (MIC) is determined by fiber fineness and maturity and is an important component of fiber quality. Gossypium barbadense …
View article: Genetic variation in <i>MYB5_A12</i> is associated with fibre initiation and elongation in tetraploid cotton
Genetic variation in <i>MYB5_A12</i> is associated with fibre initiation and elongation in tetraploid cotton Open
The MYB gene family, which is predominantly composed of the R2R3-MYB family, is large and functionally diverse in plants including cotton (Gossypium hirsutum L.) (Guan et al., 2014; Tian and Zhang, 2021; Walford et al., 2011; Wan et al., 2…
View article: Additional file 1 of Genome-wide association study of micronaire using a natural population of representative upland cotton (Gossypium hirsutum L.)
Additional file 1 of Genome-wide association study of micronaire using a natural population of representative upland cotton (Gossypium hirsutum L.) Open
Additional file 1: Table S1. Analysis of variance for FM.
View article: Additional file 2 of Genome-wide association study of micronaire using a natural population of representative upland cotton (Gossypium hirsutum L.)
Additional file 2 of Genome-wide association study of micronaire using a natural population of representative upland cotton (Gossypium hirsutum L.) Open
Additional file 2: Fig. S1. Box plots of fiber micronaire in upland cotton accessions in different environments. Fig. S2. QQ plots against genotypic and phenotypic data represent the normal distribution for genotypic and phenotypic data. T…
View article: Genome-Wide Characterization and Analysis of CIPK Gene Family in Two Cultivated Allopolyploid Cotton Species: Sequence Variation, Association with Seed Oil Content, and the Role of GhCIPK6
Genome-Wide Characterization and Analysis of CIPK Gene Family in Two Cultivated Allopolyploid Cotton Species: Sequence Variation, Association with Seed Oil Content, and the Role of GhCIPK6 Open
Calcineurin B-like protein-interacting protein kinases (CIPKs), as key regulators, play an important role in plant growth and development and the response to various stresses. In the present study, we identified 80 and 78 CIPK genes in the…
View article: Analysis of the MIR160 gene family and the role of MIR160a_A05 in regulating fiber length in cotton
Analysis of the MIR160 gene family and the role of MIR160a_A05 in regulating fiber length in cotton Open
Main conclusion The MIR160 family in Gossypium hirsutum and G. barbadense was characterized, and miR160a_A05 was found to increase cotton-fiber length by downregulating its target gene ( ARF17 ) and several GH3 genes. Abstract Cotton fiber…
View article: A Comparative Genome-Wide Analysis of the R2R3-MYB Gene Family Among Four Gossypium Species and Their Sequence Variation and Association With Fiber Quality Traits in an Interspecific G. hirsutum × G. barbadense Population
A Comparative Genome-Wide Analysis of the R2R3-MYB Gene Family Among Four Gossypium Species and Their Sequence Variation and Association With Fiber Quality Traits in an Interspecific G. hirsutum × G. barbadense Population Open
Cotton (Gossypium spp.) is the most important natural fiber crop in the world. The R2R3-MYB gene family is a large gene family involved in many plant functions including cotton fiber development. Although previous studies have reported its…
View article: Genome-Wide Identification, Sequence Variation, and Expression of the Glycerol-3-Phosphate Acyltransferase (GPAT) Gene Family in Gossypium
Genome-Wide Identification, Sequence Variation, and Expression of the Glycerol-3-Phosphate Acyltransferase (GPAT) Gene Family in Gossypium Open
Cotton is an economically important crop grown for natural fiber and seed oil production. Cottonseed oil ranks third after soybean oil and colza oil in terms of edible oilseed tonnage worldwide. Glycerol-3-phosphate acyltransferase (GPAT) …
View article: A targeted QTL analysis for fiber length using a genetic population between two introgressed backcrossed inbred lines in upland cotton (Gossypium hirsutum)
A targeted QTL analysis for fiber length using a genetic population between two introgressed backcrossed inbred lines in upland cotton (Gossypium hirsutum) Open
Cotton fiber is the most important natural raw material for the textile industry, and fiber length (FL) is one of the most important traits in cotton. Quantitative trait locus (QTL) mapping based on high-density genetic maps is an efficien…
View article: Genome-Scale Analysis of the WRI-Like Family in Gossypium and Functional Characterization of GhWRI1a Controlling Triacylglycerol Content
Genome-Scale Analysis of the WRI-Like Family in Gossypium and Functional Characterization of GhWRI1a Controlling Triacylglycerol Content Open
Cotton (Gossypium spp.) is the most important natural fiber crop and the source of cottonseed oil, a basic by-product after ginning. AtWRI1 and its orthologs in several other crop species have been previously used to increase triacylglycer…
View article: A comparative analysis of small RNAs between two Upland cotton backcross inbred lines with different fiber length: Expression and distribution
A comparative analysis of small RNAs between two Upland cotton backcross inbred lines with different fiber length: Expression and distribution Open
The cotton fiber is the most important raw material for the textile industry and an ideal model system for studying cell elongation. However, the genetic variation of fiber elongation in relation to miRNA is poorly understood. A high-throu…
View article: Additional file 5: of A combined small RNA and transcriptome sequencing analysis reveal regulatory roles of miRNAs during anther development of Upland cotton carrying cytoplasmic male sterile Gossypium harknessii (D2) cytoplasm
Additional file 5: of A combined small RNA and transcriptome sequencing analysis reveal regulatory roles of miRNAs during anther development of Upland cotton carrying cytoplasmic male sterile Gossypium harknessii (D2) cytoplasm Open
Table S5. Annotation of predicted target genes for known and novel miRNAs. (XLSX 661Â kb)
View article: Additional file 7: of A combined small RNA and transcriptome sequencing analysis reveal regulatory roles of miRNAs during anther development of Upland cotton carrying cytoplasmic male sterile Gossypium harknessii (D2) cytoplasm
Additional file 7: of A combined small RNA and transcriptome sequencing analysis reveal regulatory roles of miRNAs during anther development of Upland cotton carrying cytoplasmic male sterile Gossypium harknessii (D2) cytoplasm Open
Table S7. Information of differentially expressed miRNA-target pairs in A-B and A-R compare group. (XLSX 12Â kb)
View article: Additional file 1: of A combined small RNA and transcriptome sequencing analysis reveal regulatory roles of miRNAs during anther development of Upland cotton carrying cytoplasmic male sterile Gossypium harknessii (D2) cytoplasm
Additional file 1: of A combined small RNA and transcriptome sequencing analysis reveal regulatory roles of miRNAs during anther development of Upland cotton carrying cytoplasmic male sterile Gossypium harknessii (D2) cytoplasm Open
Table S1. Information of differentially expressed genes in A, B, and R lines. (XLSX 488Â kb)