Xiaoyan Jing
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View article: Raman flow cytometry based single‐cell species classification, viable‐cell counting and vitality test for probiotic products
Raman flow cytometry based single‐cell species classification, viable‐cell counting and vitality test for probiotic products Open
The rapidly expanding probiotic industry demands efficient methods for quality assessment of probiotic products. We previously established a microscopic imaging and Raman spectroscopy (miRS) based approach for rapid identification and test…
View article: Phylogeny-metabolism dual-directed single-cell genomics for dissecting and mining ecosystem function by FISH-scRACS-seq
Phylogeny-metabolism dual-directed single-cell genomics for dissecting and mining ecosystem function by FISH-scRACS-seq Open
View article: Effects of Ocean Vertical Depth Gradient on Bacterial Community Structure: Insights from eDNA Analysis
Effects of Ocean Vertical Depth Gradient on Bacterial Community Structure: Insights from eDNA Analysis Open
View article: On arithmetic autocorrelation of <inline-formula><tex-math id="M1">$ p $</tex-math></inline-formula>-ary <inline-formula><tex-math id="M2">$ m $</tex-math></inline-formula>-sequences
On arithmetic autocorrelation of -ary -sequences Open
View article: A unit commitment method of pumped storage in renewable energy system via a twofold particle swarm optimization algorithm
A unit commitment method of pumped storage in renewable energy system via a twofold particle swarm optimization algorithm Open
The problem of unit commitment of pumped storage power stations (UCPS) is rarely discussed in existing works of multi-energy hybrid systems scheduling. It goes against accurately evaluating the operation performance and reliability of the …
View article: Phylogeny-metabolism dual-directed single-cell genomics for dissecting and mining ecosystem function
Phylogeny-metabolism dual-directed single-cell genomics for dissecting and mining ecosystem function Open
Although microbiome-wide association studies (MWAS) have uncovered many marker organisms for an ecosystem trait, mechanisms of most microbiota-mediated processes remain elusive, due to challenges in validating the markers’ in situ metaboli…
View article: Arithmetic crosscorrelation of binary $m$-sequences with coprime periods
Arithmetic crosscorrelation of binary $m$-sequences with coprime periods Open
The arithmetic crosscorrelation of binary $m$-sequences with coprime periods $2^{n_1}-1$ and $2^{n_2}-1$\ ($\gcd(n_1,n_2)=1$) is determined. The result shows that the absolute value of arithmetic crosscorrelation of such binary $m$-sequenc…
View article: Corrigendum: Improved single-cell genome amplification by a high-efficiency phi29 DNA polymerase
Corrigendum: Improved single-cell genome amplification by a high-efficiency phi29 DNA polymerase Open
[This corrects the article DOI: 10.3389/fbioe.2023.1233856.].
View article: Improved single-cell genome amplification by a high-efficiency phi29 DNA polymerase
Improved single-cell genome amplification by a high-efficiency phi29 DNA polymerase Open
Single-cell genomic whole genome amplification (WGA) is a crucial step in single-cell sequencing, yet its low amplification efficiency, incomplete and uneven genome amplification still hinder the throughput and efficiency of single-cell se…
View article: Single‐cell rapid identification, in situ viability and vitality profiling, and genome‐based source‐tracking for probiotics products
Single‐cell rapid identification, in situ viability and vitality profiling, and genome‐based source‐tracking for probiotics products Open
Rapid expansion of the probiotics industry demands fast, sensitive, comprehensive, and low‐cost strategies for quality assessment. Here, we introduce a culture‐free, one‐cell‐resolution, phenome‐genome‐combined strategy called Single‐Cell …
View article: Artificial intelligence‐assisted automatic and index‐based microbial single‐cell sorting system for One‐Cell‐One‐Tube
Artificial intelligence‐assisted automatic and index‐based microbial single‐cell sorting system for One‐Cell‐One‐Tube Open
Identification, sorting, and sequencing of individual cells directly from in situ samples have great potential for in‐depth analysis of the structure and function of microbiomes. In this work, based on an artificial intelligence (AI)‐assis…
View article: Arithmetic autocorrelation distribution of binary $m$-sequences
Arithmetic autocorrelation distribution of binary $m$-sequences Open
Binary $m$-sequences are ones with the largest period $n=2^m-1$ among the binary sequences produced by linear shift registers with length $m$. They have a wide range of applications in communication since they have several desirable pseudo…
View article: Single-cell Raman-activated sorting and cultivation (scRACS-Culture) for assessing and mining in situ phosphate-solubilizing microbes from nature
Single-cell Raman-activated sorting and cultivation (scRACS-Culture) for assessing and mining in situ phosphate-solubilizing microbes from nature Open
Due to the challenges in detecting in situ activity and cultivating the not-yet-cultured, functional assessment and mining of living microbes from nature has typically followed a ‘culture-first’ paradigm. Here, employing phosphate-solubili…
View article: Lignocellulosic xylitol production from corncob using engineered Kluyveromycesmarxianus
Lignocellulosic xylitol production from corncob using engineered Kluyveromycesmarxianus Open
Xylitol production from lignocellulose hydrolysate is a sustainable and environment-friendly process. In this study, a systematic process of converting corncob waste into xylitol is described. First, the corncobs are hydrolyzed with acid t…
View article: The 4-Adic Complexity of Interleaved Quaternary Sequences of Even Length with Optimal Autocorrelation
The 4-Adic Complexity of Interleaved Quaternary Sequences of Even Length with Optimal Autocorrelation Open
Su et al. proposed several new classes of quaternary sequences of even length with optimal autocorrelation interleaved by twin-prime sequences pairs, GMW sequences pairs or binary cyclotomic sequences of order four in \cite{S1}. In this pa…
View article: SENP1 regulates the transformation of lung resident mesenchymal stem cells and is associated with idiopathic pulmonary fibrosis progression
SENP1 regulates the transformation of lung resident mesenchymal stem cells and is associated with idiopathic pulmonary fibrosis progression Open
Background Lung resident mesenchymal stem cells (LR-MSCs) play an important role in idiopathic pulmonary fibrosis (IPF) by transforming into myofibroblasts, thereby losing their repair ability. Evidence suggests that key proteins of multip…
View article: Endoplasmic reticulum stress modulates the fate of lung resident mesenchymal stem cell to myofibroblast via C/EBP homologous protein during pulmonary fibrosis
Endoplasmic reticulum stress modulates the fate of lung resident mesenchymal stem cell to myofibroblast via C/EBP homologous protein during pulmonary fibrosis Open
Background As a fatal interstitial lung disease, idiopathic pulmonary fibrosis (IPF) was characterized by the insidious proliferation of extracellular matrix (ECM)-producing mesenchymal cells. Recent studies have demonstrated that lung res…
View article: FSTL1 Promotes Alveolar epithelial cells Aging and Worsens Pulmonary Fibrosis by Affecting SENP1-Mediated DeSUMOylation
FSTL1 Promotes Alveolar epithelial cells Aging and Worsens Pulmonary Fibrosis by Affecting SENP1-Mediated DeSUMOylation Open
Background Alveolar epithelial cells (AECs) senescence-induced changes of lung mesenchymal cells are the key link to starting the progress of pulmonary fibrosis. Follistatin-like 1 (FSTL1) plays a central regulatory role in the complex pro…
View article: C/EBP homologous protein promotes Sonic Hedgehog secretion from type II alveolar epithelial cells and activates Hedgehog signaling pathway of fibroblast in pulmonary fibrosis
C/EBP homologous protein promotes Sonic Hedgehog secretion from type II alveolar epithelial cells and activates Hedgehog signaling pathway of fibroblast in pulmonary fibrosis Open
Background Endoplasmic reticulum (ER) stress is involved in the pathological process of pulmonary fibrosis, including IPF. It affects a broad scope of cellular types during pulmonary fibrosis but the role in epithelial-mesenchymal crosstal…
View article: Revealing CO2-Fixing SAR11 Bacteria in the Ocean by Raman-Based Single-Cell Metabolic Profiling and Genomics
Revealing CO2-Fixing SAR11 Bacteria in the Ocean by Raman-Based Single-Cell Metabolic Profiling and Genomics Open
View article: Regulation of the IGF1 signaling pathway is involved in idiopathic pulmonary fibrosis induced by alveolar epithelial cell senescence and core fucosylation
Regulation of the IGF1 signaling pathway is involved in idiopathic pulmonary fibrosis induced by alveolar epithelial cell senescence and core fucosylation Open
Idiopathic pulmonary fibrosis (IPF) mainly occurs in elderly people over the age of sixty. IPF pathogenesis is associated with alveolar epithelial cells (AECs) senescence. Activation of PI3K/AKT signaling induced by insulin-like growth fac…
View article: On the 4-Adic Complexity of Quaternary Sequences with Ideal Autocorrelation
On the 4-Adic Complexity of Quaternary Sequences with Ideal Autocorrelation Open
In this paper, we determine the 4-adic complexity of the balanced quaternary sequences of period $2p$ and $2(2^n-1)$ with ideal autocorrelation defined by Kim et al. (ISIT, pp. 282-285, 2009) and Jang et al. (ISIT, pp. 278-281, 2009), resp…
View article: One-Cell Metabolic Phenotyping and Sequencing of Soil Microbiome by Raman-Activated Gravity-Driven Encapsulation (RAGE)
One-Cell Metabolic Phenotyping and Sequencing of Soil Microbiome by Raman-Activated Gravity-Driven Encapsulation (RAGE) Open
Soil is home to an enormous and complex microbiome that features arguably the highest genomic diversity and metabolic heterogeneity of cells on Earth. Their in situ metabolic activities drive many natural processes of pivotal ecological si…
View article: 4-Adic Complexity of Interleaved Quaternary Sequences
4-Adic Complexity of Interleaved Quaternary Sequences Open
Tang and Ding \cite{X. Tang} present a series of quaternary sequences $w(a, b)$ interleaved by two binary sequences $a$ and $b$ with ideal autocorrelation and show that such interleaved quaternary sequences have optimal autocorrelation. In…
View article: Determination of the Autocorrelation Distribution and 2-Adic Complexity of Generalized Cyclotomic Binary Sequences of Order 2 with Period pq
Determination of the Autocorrelation Distribution and 2-Adic Complexity of Generalized Cyclotomic Binary Sequences of Order 2 with Period pq Open
The generalized cyclotomic binary sequences $S=S(a, b, c)$ with period $n=pq$ have good autocorrelation property where $(a, b, c)\in \{0, 1\}^3$ and $p, q$ are distinct odd primes. For some cases, the sequences $S$ have ideal or optimal au…
View article: Microbial metabolism and necromass mediated fertilization effect on soil organic carbon after long-term community incubation in different climates
Microbial metabolism and necromass mediated fertilization effect on soil organic carbon after long-term community incubation in different climates Open
Understanding the effects of changing climate and long-term human activities on soil organic carbon (SOC) and the mediating roles of microorganisms is critical to maintain soil C stability in agricultural ecosystem. Here, we took samples f…
View article: Whole-exome sequencing identifies susceptibility genes and pathways for idiopathic pulmonary fibrosis in the Chinese population
Whole-exome sequencing identifies susceptibility genes and pathways for idiopathic pulmonary fibrosis in the Chinese population Open
View article: The 2-Adic Complexity of Two Classes of Binary Sequences with Interleaved Structure
The 2-Adic Complexity of Two Classes of Binary Sequences with Interleaved Structure Open
The autocorrelation values of two classes of binary sequences are shown to be good in [6]. We study the 2-adic complexity of these sequences. Our results show that the 2-adic complexity of such sequences is large enough to resist the attac…
View article: Relation between sex hormones and leucocyte telomere length in men with idiopathic pulmonary fibrosis
Relation between sex hormones and leucocyte telomere length in men with idiopathic pulmonary fibrosis Open
Background and objective IPF is an ageing‐related lung disorder featuring progressive lung scarring. IPF patients are frequently identified with short telomeres but coding mutations in telomerase can only explain a minority of cases. Sex h…
View article: The Association Between MUC5B Mutations and Clinical Outcome in Patients with Rheumatoid Arthritis-Associated Interstitial Lung Disease: A Retrospective Exploratory Study in China
The Association Between MUC5B Mutations and Clinical Outcome in Patients with Rheumatoid Arthritis-Associated Interstitial Lung Disease: A Retrospective Exploratory Study in China Open
BACKGROUND:Patients with rheumatoid arthritis (RA) who develop interstitial lung disease (RA-ILD), show features of usual interstitial pneumonia (UIP) on high-resolution computed tomography (HRCT). This retrospective exploratory clinical s…