Xuebin Xu
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View article: Global genomic survey of <i>Salmonella</i> Kentucky: discovery of a chromosomeborne <i>bla</i> <sub>NDM-5</sub> and the emergence of ST314, an MDR clone mediated by the IncR plasmid
Global genomic survey of <i>Salmonella</i> Kentucky: discovery of a chromosomeborne <i>bla</i> <sub>NDM-5</sub> and the emergence of ST314, an MDR clone mediated by the IncR plasmid Open
Antimicrobial resistance (AMR) in Salmonella enterica serotype Kentucky (S. Kentucky) is a global challenge, with increasing resistance to cephalosporins, ciprofloxacin, and carbapenems significantly limiting treatment strate…
View article: Population Genomics and Antimicrobial Resistance trends of Emerging Salmonella Aberdeen Clones Circulating among Humans and Seafood
Population Genomics and Antimicrobial Resistance trends of Emerging Salmonella Aberdeen Clones Circulating among Humans and Seafood Open
View article: Genomic analysis of invasive and non-invasive disease-causing Streptococcus pneumoniae isolated from children between 2014 and 2023 in Suzhou, China
Genomic analysis of invasive and non-invasive disease-causing Streptococcus pneumoniae isolated from children between 2014 and 2023 in Suzhou, China Open
In 2017, 553,000 clinical cases of Streptococcus pneumoniae in children were reported in China, although the pneumococcal conjugate vaccine (PCV), which targets the pneumococcal capsule, is not included in the Chinese National Immunization…
View article: The First Case of Antimicrobial-Resistant Salmonella Stanley ST29 Diagnosed Secondary to Acute Cholecystitis
The First Case of Antimicrobial-Resistant Salmonella Stanley ST29 Diagnosed Secondary to Acute Cholecystitis Open
The case of Salmonella Stanley ST29 isolated from a patient with diarrhoea lasting 55 days secondary to cholecystitis aligns with the characteristics of high drug resistance and relatively low virulence. This highlights the need for…
View article: Phenotypic and WGS-derived antibiotic resistance patterns of Salmonella Enteritidis isolates from retail meat and environment during 2014 to 2019 in China
Phenotypic and WGS-derived antibiotic resistance patterns of Salmonella Enteritidis isolates from retail meat and environment during 2014 to 2019 in China Open
The emergence of multidrug-resistant (MDR) Salmonella Enteritidis has highlighted the importance of regularly monitoring for the occurrence of antibiotic-resistant strains. The current study combined phenotyping analysis and whole-genome-s…
View article: A review of Allii macrostemonis Bulbus polysaccharides: Extraction, purification, structural characterization, and biological activity
A review of Allii macrostemonis Bulbus polysaccharides: Extraction, purification, structural characterization, and biological activity Open
View article: Longitudinal Trends and Drivers of Antimicrobial Resistance in Campylobacter Worldwide (1954-2023)
Longitudinal Trends and Drivers of Antimicrobial Resistance in Campylobacter Worldwide (1954-2023) Open
Objective: The zoonotic pathogen Campylobacter is a major foodborne bacterial species worldwide. The distribution and drivers of antimicrobial resistance (AMR) in global Campylobacter strains remain largely unknown. Therefore, a comprehens…
View article: Genomic perspective on the bacillus causing paratyphoid B fever
Genomic perspective on the bacillus causing paratyphoid B fever Open
Paratyphoid B fever (PTB) is caused by an invasive lineage (phylogroup 1, PG1) of Salmonella enterica serotype Paratyphi B (SPB). However, little was known about the global population structure, geographic distribution, and evolution of th…
View article: Global population structure and genomic insights into Chromobacterium violaceum of human invasive lethal infection and non-human origins
Global population structure and genomic insights into Chromobacterium violaceum of human invasive lethal infection and non-human origins Open
View article: Prevalence and Characteristics of Plasmid-Mediated Fosfomycin Resistance Gene fosA3 among Salmonella Enteritidis Isolates from Retail Chickens and Children with Gastroenteritis in China
Prevalence and Characteristics of Plasmid-Mediated Fosfomycin Resistance Gene fosA3 among Salmonella Enteritidis Isolates from Retail Chickens and Children with Gastroenteritis in China Open
A total of 265 Salmonella Enteritidis isolates collected from retail markets and children’s hospitals in Shanghai were used to investigate the prevalence and molecular epidemiology of plasmid-mediated fosfomycin resistance genes. Nine of t…
View article: Genomic perspective on the bacillus causing paratyphoid B fever
Genomic perspective on the bacillus causing paratyphoid B fever Open
Paratyphoid B fever (PTB) is caused by an invasive lineage (phylogroup 1, PG1) of Salmonella enterica serotype Paratyphi B (SPB). Here, we provide a genomic overview of the population structure, geographic distribution, and evolution of SP…
View article: Genomic investigation of Salmonella enterica Serovar Welikade from a pediatric diarrhea case first time in Shanghai, China
Genomic investigation of Salmonella enterica Serovar Welikade from a pediatric diarrhea case first time in Shanghai, China Open
View article: Small extracellular vesicle microRNAs in pediatric myasthenia gravis plasma and skeletal muscle
Small extracellular vesicle microRNAs in pediatric myasthenia gravis plasma and skeletal muscle Open
Background The diagnosis of myasthenia gravis (MG) in children remains difficult. Circulating small extracellular vesicle (sEV)-derived miRNAs (sEV-miRNAs) have been recognized as biomarkers of various diseases and can be excreted by diffe…
View article: Antimicrobial Resistance and Molecular Characterization of Salmonella Rissen Isolated in China During 2008–2019
Antimicrobial Resistance and Molecular Characterization of Salmonella Rissen Isolated in China During 2008–2019 Open
The high frequencies of multidrug resistance and probable clonal dissemination in this serovar call for the necessity of systematic surveillance on S. Rissen in China.
View article: <i>Salmonella</i> Grumpensis Causing Diarrhea in Children — Shanghai Municipality, China, 2023
<i>Salmonella</i> Grumpensis Causing Diarrhea in Children — Shanghai Municipality, China, 2023 Open
It underscores the importance of thorough genomic surveillance to promptly detect emerging pathogens. Public health laboratories play a crucial role by utilizing advanced genomic technologies for accurate pathogen identification and timely…
View article: An integrated nationwide genomics study reveals transmission modes of typhoid fever in China
An integrated nationwide genomics study reveals transmission modes of typhoid fever in China Open
Typhoid fever, caused by Salmonella Typhi ( S . Typhi), is a life-threatening disease, usually food-borne and commonly associated with international travel. The disease transmission remains endemic in many low- and middle-income countries,…
View article: Genomic analysis of almost 8,000 <i>Salmonella</i> genomes reveals drivers and landscape of antimicrobial resistance in China
Genomic analysis of almost 8,000 <i>Salmonella</i> genomes reveals drivers and landscape of antimicrobial resistance in China Open
Foodborne Salmonella infection remains a major public health concern worldwide. With rising antimicrobial resistance, genomic surveillance is key to tracking outbreaks and monitoring transmission, but there is no comprehensive national sur…
View article: Genetic characterization of a Salmonella enterica serovar Typhimurium isolated from an infant with concurrent resistance to ceftriaxone, ciprofloxacin and azithromycin
Genetic characterization of a Salmonella enterica serovar Typhimurium isolated from an infant with concurrent resistance to ceftriaxone, ciprofloxacin and azithromycin Open
Our findings highlight that continuously monitor the changes in antibiotic resistance patterns and research on the resistance mechanisms in potential human pathogens are imperative.
View article: Lung segmentation in chest X‐ray image using multi‐interaction feature fusion network
Lung segmentation in chest X‐ray image using multi‐interaction feature fusion network Open
Lung segmentation is an essential step in a computer‐aided diagnosis system for chest radiographs. The lung parenchyma is first segmented in pulmonary computer‐aided diagnosis systems to remove the interference of non‐lung regions while in…
View article: Genome degradation promotes <i>Salmonella</i> pathoadaptation by remodeling fimbriae-mediated proinflammatory response
Genome degradation promotes <i>Salmonella</i> pathoadaptation by remodeling fimbriae-mediated proinflammatory response Open
Understanding changes in pathogen behavior (e.g. increased virulence, a shift in transmission channel) is critical for the public health management of emerging infectious diseases. Genome degradation via gene depletion or inactivation is r…
View article: High Levels of Antibiotic Resistance in MDR-Strong Biofilm-Forming Salmonella Typhimurium ST34 in Southern China
High Levels of Antibiotic Resistance in MDR-Strong Biofilm-Forming Salmonella Typhimurium ST34 in Southern China Open
Salmonella enterica subsp. enterica serovar Typhimurium (S. typhimurium) is an important zoonotic pathogen with important public health significance. To understand S. typhimurium’s epidemiological characteristics in China, multi-locus sequ…
View article: A high‐performance and lightweight framework for real‐time facial expression recognition
A high‐performance and lightweight framework for real‐time facial expression recognition Open
Facial expression recognition technology has become a powerful tool for conveying human emotions and intentions and is widely used in areas such as assisted driving and intelligent medical care. Due to the limited computing power of curren…
View article: A Feature Fusion Human Ear Recognition Method Based on Channel Features and Dynamic Convolution
A Feature Fusion Human Ear Recognition Method Based on Channel Features and Dynamic Convolution Open
Ear images are easy to capture, and ear features are relatively stable and can be used for identification. The ear images are all asymmetric, and the asymmetry of the ear images collected in the unconstrained environment will be more prono…
View article: NAMRTNet: Automatic Classification of Sleep Stages Based on Improved ResNet-TCN Network and Attention Mechanism
NAMRTNet: Automatic Classification of Sleep Stages Based on Improved ResNet-TCN Network and Attention Mechanism Open
Sleep, as the basis for regular body functioning, can affect human health. Poor sleep conditions can lead to various physical ailments, such as poor immunity, memory loss, slow cognitive development, and cardiovascular diseases. Along the …
View article: Metagenomic next-generation sequencing and proteomics analysis in pediatric viral encephalitis and meningitis
Metagenomic next-generation sequencing and proteomics analysis in pediatric viral encephalitis and meningitis Open
Introduction Early and accurate identification of pathogens is essential for improved outcomes in patients with viral encephalitis (VE) and/or viral meningitis (VM). Methods In our research, Metagenomic next-generation sequencing (mNGS) wh…
View article: Residence time of carbon in paddy soils
Residence time of carbon in paddy soils Open
View article: Geography shapes the genomics and antimicrobial resistance of Salmonella enterica Serovar Enteritidis isolated from humans
Geography shapes the genomics and antimicrobial resistance of Salmonella enterica Serovar Enteritidis isolated from humans Open
View article: Genomic Characterization of Salmonella enterica serovar Weltevreden Associated with Human Diarrhea
Genomic Characterization of Salmonella enterica serovar Weltevreden Associated with Human Diarrhea Open
Salmonella Weltevreden is a pathogen associated with human diarrheal diseases found across the globe. However, knowledge of the genomics and epidemiology of this pathogen is still limited.
View article: Isolated Word Sign Language Recognition Based on Improved SKResNet‐TCN Network
Isolated Word Sign Language Recognition Based on Improved SKResNet‐TCN Network Open
This paper proposes an improved selective kernel network‐temporal convolutional (SKResNet‐TCN) network‐based video recognition model for isolated word sign language with too large parameters, large computation, and difficult to extract eff…
View article: The temporal dynamics of antimicrobial-resistant <i>Salmonella enterica</i> and predominant serovars in China
The temporal dynamics of antimicrobial-resistant <i>Salmonella enterica</i> and predominant serovars in China Open
Salmonella enterica is one of the most common bacterial pathogens in humans and animals. Systematic studies on the trends and geographical distribution of antimicrobial-resistant Salmonella and dominant serovars have been well studied in E…