Yuki Katou
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View article: Paternal restraint stress affects offspring metabolism via ATF-2 dependent mechanisms in Drosophila melanogaster germ cells
Paternal restraint stress affects offspring metabolism via ATF-2 dependent mechanisms in Drosophila melanogaster germ cells Open
Paternal environmental factors can epigenetically influence gene expressions in offspring. We demonstrate that restraint stress, an experimental model for strong psychological stress, to fathers affects the epigenome, transcriptome, and me…
View article: Chromosome-associated RNA–protein complexes promote pairing of homologous chromosomes during meiosis in Schizosaccharomyces pombe
Chromosome-associated RNA–protein complexes promote pairing of homologous chromosomes during meiosis in Schizosaccharomyces pombe Open
Pairing of homologous chromosomes in meiosis is essential for sexual reproduction. We have previously demonstrated that the fission yeast sme2 RNA, a meiosis-specific long noncoding RNA (lncRNA), accumulates at the sme2 chromosomal loci an…
View article: Comprehensive epigenome characterization reveals diverse transcriptional regulation across human vascular endothelial cells
Comprehensive epigenome characterization reveals diverse transcriptional regulation across human vascular endothelial cells Open
Background Endothelial cells (ECs) make up the innermost layer throughout the entire vasculature. Their phenotypes and physiological functions are initially regulated by developmental signals and extracellular stimuli. The underlying molec…
View article: Comparative analysis demonstrates cell type-specific conservation of SOX9 targets between mouse and chicken
Comparative analysis demonstrates cell type-specific conservation of SOX9 targets between mouse and chicken Open
SRY (sex-determining region Y)-box 9 (SOX9) is a transcription factor regulating both chondrogenesis and sex determination. Among vertebrates, SOX9’s functions in chondrogenesis are well conserved, while they vary in sex determination. To …
View article: MOESM1 of Comprehensive epigenome characterization reveals diverse transcriptional regulation across human vascular endothelial cells
MOESM1 of Comprehensive epigenome characterization reveals diverse transcriptional regulation across human vascular endothelial cells Open
Additional file 1: Table S1. EC sample list.
View article: MOESM7 of Comprehensive epigenome characterization reveals diverse transcriptional regulation across human vascular endothelial cells
MOESM7 of Comprehensive epigenome characterization reveals diverse transcriptional regulation across human vascular endothelial cells Open
Additional file 7: Table S6. DE clusters.
View article: MOESM5 of Comprehensive epigenome characterization reveals diverse transcriptional regulation across human vascular endothelial cells
MOESM5 of Comprehensive epigenome characterization reveals diverse transcriptional regulation across human vascular endothelial cells Open
Additional file 5: Table S4. GWAS and enhancer sites.
View article: MOESM2 of Comprehensive epigenome characterization reveals diverse transcriptional regulation across human vascular endothelial cells
MOESM2 of Comprehensive epigenome characterization reveals diverse transcriptional regulation across human vascular endothelial cells Open
Additional file 2: Table S2. Quality values of ChIP-seq and RNA-seq data.
View article: MOESM4 of Comprehensive epigenome characterization reveals diverse transcriptional regulation across human vascular endothelial cells
MOESM4 of Comprehensive epigenome characterization reveals diverse transcriptional regulation across human vascular endothelial cells Open
Additional file 4: Table S3. EC enhancer sites.
View article: MOESM6 of Comprehensive epigenome characterization reveals diverse transcriptional regulation across human vascular endothelial cells
MOESM6 of Comprehensive epigenome characterization reveals diverse transcriptional regulation across human vascular endothelial cells Open
Additional file 6: Table S5. DEG clusters.
View article: MOESM8 of Comprehensive epigenome characterization reveals diverse transcriptional regulation across human vascular endothelial cells
MOESM8 of Comprehensive epigenome characterization reveals diverse transcriptional regulation across human vascular endothelial cells Open
Additional file 8: Table S7. DP clusters.
View article: Identification of Elg1 interaction partners and effects on post-replication chromatin re-formation
Identification of Elg1 interaction partners and effects on post-replication chromatin re-formation Open
Elg1, the major subunit of a Replication Factor C-like complex, is critical to ensure genomic stability during DNA replication, and is implicated in controlling chromatin structure. We investigated the consequences of Elg1 loss for the dyn…
View article: Mapping of histone-binding sites in histone replacement-completed spermatozoa
Mapping of histone-binding sites in histone replacement-completed spermatozoa Open
The majority of histones are replaced by protamines during spermatogenesis, but small amounts are retained in mammalian spermatozoa. Since nucleosomes in spermatozoa influence epigenetic inheritance, it is important to know how histones ar…
View article: MRG15-mediated tethering of PALB2 to unperturbed chromatin protects active genes from genotoxic stress
MRG15-mediated tethering of PALB2 to unperturbed chromatin protects active genes from genotoxic stress Open
Significance Partner and localiser of BRCA2 (PALB2) is a breast cancer susceptibility gene, and the role of its product in repairing broken chromosomes has been extensively described. However, a fraction of PALB2 is also found on intact ch…
View article: Decreased cohesin in the brain leads to defective synapse development and anxiety-related behavior
Decreased cohesin in the brain leads to defective synapse development and anxiety-related behavior Open
Abnormal epigenetic regulation can cause the nervous system to develop abnormally. Here, we sought to understand the mechanism by which this occurs by investigating the protein complex cohesin, which is considered to regulate gene expressi…
View article: Supplementary figures in "interleukin-11 induces and maintains progenitors of different cell lineages during Xenopus tadpole tail regeneration"
Supplementary figures in "interleukin-11 induces and maintains progenitors of different cell lineages during Xenopus tadpole tail regeneration" Open
High resolution images of Supplementary Fig. 1, 3-9, 11 in "interleukin-11 induces and maintains progenitors of different cell lineages during Xenopus tadpole tail regeneration"
View article: <i>ASBEL</i> –TCF3 complex is required for the tumorigenicity of colorectal cancer cells
<i>ASBEL</i> –TCF3 complex is required for the tumorigenicity of colorectal cancer cells Open
Significance Wnt/β-catenin signaling plays crucial roles in the regulation of proliferation, cell fate, the self-renewal of stem and progenitor cells, and tumorigenesis. Long noncoding RNAs (lncRNAs), non–protein-coding transcripts longer …