Yunpeng Zhong
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View article: Transcriptome-Wide Survey of LBD Transcription Factors in Actinidia valvata Under Waterlogging Stress and Functional Analysis of Two AvLBD41 Members
Transcriptome-Wide Survey of LBD Transcription Factors in Actinidia valvata Under Waterlogging Stress and Functional Analysis of Two AvLBD41 Members Open
Actinidia valvata, a promising rootstock for kiwifruit cultivation, demonstrates superior waterlogging tolerance compared with commercial cultivars. Lateral organ boundaries domain (LBD) transcription factors (TFs) are known to be pivotal …
View article: Construction of Garlic Core Collections Based on the Agronomic Traits of 366 Germplasm Accessions
Construction of Garlic Core Collections Based on the Agronomic Traits of 366 Germplasm Accessions Open
In this study, 21 agronomic traits (14 quantitative and 7 qualitative) of 366 garlic germplasm accessions were analyzed using correlation, principal component, and cluster analyses. Genetic diversity was analyzed by the unweighted pair gro…
View article: AvERF73 positively regulates waterlogging tolerance in kiwifruit by participating in hypoxia response and mevalonate pathway
AvERF73 positively regulates waterlogging tolerance in kiwifruit by participating in hypoxia response and mevalonate pathway Open
Waterlogging stress is one of the greatest environmental threats to kiwifruit growth and development. ERF-VII proteins have been demonstrated to play pivotal roles in regulating plant tolerance to waterlogging. Nevertheless, the genome-wid…
View article: A High-K+ Affinity Transporter (HKT) from Actinidia valvata Is Involved in Salt Tolerance in Kiwifruit
A High-K+ Affinity Transporter (HKT) from Actinidia valvata Is Involved in Salt Tolerance in Kiwifruit Open
Ion transport is crucial for salt tolerance in plants. Under salt stress, the high-affinity K+ transporter (HKT) family is mainly responsible for the long-distance transport of salt ions which help to reduce the deleterious effects of high…
View article: Development of sex-linked markers for gender identification of Actinidia arguta
Development of sex-linked markers for gender identification of Actinidia arguta Open
The fruit of the dioecious plant Actinidia arguta has become a great attraction recently. It has long been difficult to distinguish the genders of hybrid seedlings before flowering, therefore increasing the expenditures of breeding. To pro…
View article: The ERF-VII transcription factor AvERF75 positively regulates the waterlogging tolerance by interacting with AvLOB41 in kiwifruit (Actinidia valvata)
The ERF-VII transcription factor AvERF75 positively regulates the waterlogging tolerance by interacting with AvLOB41 in kiwifruit (Actinidia valvata) Open
The ethylene-responsive VII (ERF-VII) transcription factors are crucial in regulating plant waterlogging tolerance. However, the positive role of ERF-VII genes in kiwifruit waterlogging tolerance is rarely reported. In this study, we clone…
View article: Transcriptome-Wide Identification and Functional Characterization of CIPK Gene Family Members in Actinidia valvata under Salt Stress
Transcriptome-Wide Identification and Functional Characterization of CIPK Gene Family Members in Actinidia valvata under Salt Stress Open
Fruit plants are severely constrained by salt stress in the soil due to their sessile nature. Ca2+ sensors, which are known as CBL-interacting protein kinases (CIPKs), transmit abiotic stress signals to plants. Therefore, it is imperative …
View article: Development of a <scp>135K SNP</scp> genotyping array for <i>Actinidia arguta</i> and its applications for genetic mapping and <scp>QTL</scp> analysis in kiwifruit
Development of a <span>135K SNP</span> genotyping array for <i>Actinidia arguta</i> and its applications for genetic mapping and <span>QTL</span> analysis in kiwifruit Open
Summary Kiwifruit ( Actinidia spp) is a woody, perennial and deciduous vine. In this genus, there are multiple ploidy levels but the main cultivated cultivars are polyploid. Despite the availability of many genomic resources in kiwifruit, …
View article: Effects of Kiwifruit Rootstocks with Opposite Tolerance on Physiological Responses of Grafting Combinations under Waterlogging Stress
Effects of Kiwifruit Rootstocks with Opposite Tolerance on Physiological Responses of Grafting Combinations under Waterlogging Stress Open
Kiwifruit is commonly sensitive to waterlogging stress, and grafting onto a waterlogging-tolerant rootstock is an efficient strategy for enhancing the waterlogging tolerance of kiwifruit plants. KR5 (Actinidia valvata) is more tolerant to …
View article: Overexpression of AcEXPA23 Promotes Lateral Root Development in Kiwifruit
Overexpression of AcEXPA23 Promotes Lateral Root Development in Kiwifruit Open
Kiwifruit is loved by consumers for its unique taste and rich vitamin C content. Kiwifruit are very sensitive to adverse soil environments owing to fleshy and shallow roots, which limits the uptake of water and nutrients into the root syst…
View article: Full-Length Transcriptome and RNA-Seq Analyses Reveal the Mechanisms Underlying Waterlogging Tolerance in Kiwifruit (Actinidia valvata)
Full-Length Transcriptome and RNA-Seq Analyses Reveal the Mechanisms Underlying Waterlogging Tolerance in Kiwifruit (Actinidia valvata) Open
Actinidia valvata possesses waterlogging tolerance; however, the mechanisms underlying this trait are poorly characterized. Here, we performed a transcriptome analysis by combining single-molecule real-time (SMRT) sequencing and Illumina R…
View article: Comparative transcriptome and metabolome analysis reveal key regulatory defense networks and genes involved in enhanced salt tolerance of <i>Actinidia</i> (kiwifruit)
Comparative transcriptome and metabolome analysis reveal key regulatory defense networks and genes involved in enhanced salt tolerance of <i>Actinidia</i> (kiwifruit) Open
The Actinidia (kiwifruit) is an emerging fruit plant that is severely affected by salt stress in northern China. Plants have evolved several signaling network mechanisms to cope with the detrimental effects of salt stress. To date, no repo…
View article: Physiological Responses of Two Contrasting Kiwifruit (Actinidia spp.) Rootstocks against Waterlogging Stress
Physiological Responses of Two Contrasting Kiwifruit (Actinidia spp.) Rootstocks against Waterlogging Stress Open
Rootstocks from Actinidia valvata are much more tolerant to waterlogging stress than those from Actinidia deliciosa, which are commonly used in kiwifruit production. To date, the tolerance mechanism of A. valvata rootstocks’ adaptation to …
View article: AvNAC030, a NAC Domain Transcription Factor, Enhances Salt Stress Tolerance in Kiwifruit
AvNAC030, a NAC Domain Transcription Factor, Enhances Salt Stress Tolerance in Kiwifruit Open
Kiwifruit (Actinidia chinensis Planch) is suitable for neutral acid soil. However, soil salinization is increasing in kiwifruit production areas, which has adverse effects on the growth and development of plants, leading to declining yield…
View article: Full-length transcriptome profiling reveals insight into the cold response of two kiwifruit genotypes (A. arguta) with contrasting freezing tolerances
Full-length transcriptome profiling reveals insight into the cold response of two kiwifruit genotypes (A. arguta) with contrasting freezing tolerances Open
Background Kiwifruit ( Actinidia Lindl.) is considered an important fruit species worldwide. Due to its temperate origin, this species is highly vulnerable to freezing injury while under low-temperature stress. To obtain further knowledge …
View article: Comparative Metabolomic and Transcriptomic Studies Reveal Key Metabolism Pathways Contributing to Freezing Tolerance Under Cold Stress in Kiwifruit
Comparative Metabolomic and Transcriptomic Studies Reveal Key Metabolism Pathways Contributing to Freezing Tolerance Under Cold Stress in Kiwifruit Open
Cold stress poses a serious treat to cultivated kiwifruit since this plant generally has a weak ability to tolerate freezing tolerance temperatures. Surprisingly, however, the underlying mechanism of kiwifruit’s freezing tolerance remains …
View article: The AaCBF4-AaBAM3.1 module enhances freezing tolerance of kiwifruit (Actinidia arguta)
The AaCBF4-AaBAM3.1 module enhances freezing tolerance of kiwifruit (Actinidia arguta) Open
Beta-amylase (BAM) plays an important role in plant resistance to cold stress. However, the specific role of the BAM gene in freezing tolerance is poorly understood. In this study, we demonstrated that a cold-responsive gene module was inv…
View article: Transcriptome-wide identification and expression analysis of ERF family genes in Actinidia valvata during waterlogging stress
Transcriptome-wide identification and expression analysis of ERF family genes in Actinidia valvata during waterlogging stress Open
Recently, there has been a tremendous increase in the cultivated area of kiwifruit in China. However, the low tolerance of most cultivars to waterlogging largely halted its expansion in waterlogged areas. Previously, some genotypes from Ac…
View article: BSR-Seq analysis provides insights into the cold stress response of Actinidia arguta F1 populations
BSR-Seq analysis provides insights into the cold stress response of Actinidia arguta F1 populations Open
View article: Additional file 6 of Full-length transcriptome profiling reveals insight into the cold response of two kiwifruit genotypes (A. arguta) with contrasting freezing tolerances
Additional file 6 of Full-length transcriptome profiling reveals insight into the cold response of two kiwifruit genotypes (A. arguta) with contrasting freezing tolerances Open
Additional file 6 Table S3. DEGs related to TFs.
View article: Additional file 2 of BSR-Seq analysis provides insights into the cold stress response of Actinidia arguta F1 populations
Additional file 2 of BSR-Seq analysis provides insights into the cold stress response of Actinidia arguta F1 populations Open
Additional file 2: Table S2. Lethal temperature of 50% (LT50) in 100 populations of ‘Ruby-3’ × ‘Kuilv’ male.
View article: Additional file 7 of Full-length transcriptome profiling reveals insight into the cold response of two kiwifruit genotypes (A. arguta) with contrasting freezing tolerances
Additional file 7 of Full-length transcriptome profiling reveals insight into the cold response of two kiwifruit genotypes (A. arguta) with contrasting freezing tolerances Open
Additional file 7 Table S4. Top 100 hub genes in the blue module.
View article: Additional file 4 of BSR-Seq analysis provides insights into the cold stress response of Actinidia arguta F1 populations
Additional file 4 of BSR-Seq analysis provides insights into the cold stress response of Actinidia arguta F1 populations Open
Additional file 4: Table S4. Significant GO classifications associated with differentially expressed genes.
View article: Additional file 5 of Full-length transcriptome profiling reveals insight into the cold response of two kiwifruit genotypes (A. arguta) with contrasting freezing tolerances
Additional file 5 of Full-length transcriptome profiling reveals insight into the cold response of two kiwifruit genotypes (A. arguta) with contrasting freezing tolerances Open
Additional file 5 Table S2. DEGs related to hormone and calcium signal.
View article: Additional file 5 of BSR-Seq analysis provides insights into the cold stress response of Actinidia arguta F1 populations
Additional file 5 of BSR-Seq analysis provides insights into the cold stress response of Actinidia arguta F1 populations Open
Additional file 5: Table S5. Primers used for qRT-PCR.
View article: Additional file 3 of BSR-Seq analysis provides insights into the cold stress response of Actinidia arguta F1 populations
Additional file 3 of BSR-Seq analysis provides insights into the cold stress response of Actinidia arguta F1 populations Open
Additional file 3: Table S3. Significant KEGG pathways associated with differentially expressed genes.
View article: Additional file 4 of Full-length transcriptome profiling reveals insight into the cold response of two kiwifruit genotypes (A. arguta) with contrasting freezing tolerances
Additional file 4 of Full-length transcriptome profiling reveals insight into the cold response of two kiwifruit genotypes (A. arguta) with contrasting freezing tolerances Open
Additional file 4 Table S1. DEGs related to Starch and sucrose metabolism, MAPK signaling pathway, Phosphatidylinositol signaling system, Inositol phosphate metabolism, Arginine and proline metabolism.
View article: Additional file 1 of BSR-Seq analysis provides insights into the cold stress response of Actinidia arguta F1 populations
Additional file 1 of BSR-Seq analysis provides insights into the cold stress response of Actinidia arguta F1 populations Open
Additional file 1: Table S1. Relative electrolyte leakage (REL) of 492 populations subjected to − 30 °C treatment.
View article: BSR-Seq Analysis Provides Insights into Cold Stress in Actinidia Arguta F1 Populations
BSR-Seq Analysis Provides Insights into Cold Stress in Actinidia Arguta F1 Populations Open
BackgroundThe freezing injury, which is one of the important abiotic stresses in horticultural crops, can influences the growth and development and the production area of kiwifruit ( Actinidia Lind1). Actinidia arguta has excellent cold re…
View article: Comparative Transcriptome Analysis of Two Contrasting Kiwifruit (Actinidia) Genotypes under Waterlogging Stress
Comparative Transcriptome Analysis of Two Contrasting Kiwifruit (Actinidia) Genotypes under Waterlogging Stress Open
Kiwifruit vines are generally sensitive to waterlogging stress. So far, molecular responses of different kiwifruit genotypes for waterlogging stress are less well-explored. In this study, using RNA-sequencing, we examined transcriptional r…