Ye Deng
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View article: Targeting ANT1 to regulate PINK1/Parkin-mediated mitophagy is an effective treatment of trauma-induced tendon heterotopic ossification
Targeting ANT1 to regulate PINK1/Parkin-mediated mitophagy is an effective treatment of trauma-induced tendon heterotopic ossification Open
Background: Heterotopic ossification (HO) is a common degenerative disease following trauma. Tendon HO is primarily attributed to osteogenic differentiation of stem/progenitor cells within the tendon. However, the precise mechanism underly…
View article: Therapeutic landscape optimization strategies for age-appropriate public facilities in Shanghai
Therapeutic landscape optimization strategies for age-appropriate public facilities in Shanghai Open
As urbanization accelerates and populations age, creating age-appropriate environments that support elderly health and well-being has become a critical challenge. This study focuses on optimizing the configuration of public service facilit…
View article: Circular Picture Fuzzy Evaluation Based on Distance from Average Solution for Youth Sports and Physical Health in China
Circular Picture Fuzzy Evaluation Based on Distance from Average Solution for Youth Sports and Physical Health in China Open
The growth of youth sports and the refinement in physical health have become the mainstream national intentions in China, particularly in response to increased consideration of student well-being and the need for structure in extracurricul…
View article: Exploring the polymorphism and origins of accessory chromosomes in Tremella fuciformis: insights into genome divergence and structural variation
Exploring the polymorphism and origins of accessory chromosomes in Tremella fuciformis: insights into genome divergence and structural variation Open
Accessory chromosomes, while not essential for normal growth and development, have been extensively studied in Ascomycota fungi, but their presence in basidiomycetes is less documented. In this study, whole-genome sequencing was conducted …
View article: Selective recruitment of core rhizobacterial communities with distinct life-history strategies by two grass genera
Selective recruitment of core rhizobacterial communities with distinct life-history strategies by two grass genera Open
The intricate relationships between plants and their rhizobacteria are crucial for plant success, yet our understanding of these associations, particularly in diverse alpine natural grasslands, remains limited. Here, we investigated two wi…
View article: Impacts of Captive Domestication and Geographical Divergence on the Gut Microbiome of Endangered Forest Musk Deer
Impacts of Captive Domestication and Geographical Divergence on the Gut Microbiome of Endangered Forest Musk Deer Open
Forest musk deer (Moschus berezovskii Flerov), a critically endangered ruminant species, faces extinction risks, with captive populations further threatened by prevalent digestive and immune disorders. This study utilized comparative metag…
View article: dbscATAC: a resource of single-cell super-enhancers/enhancers and gene markers derived from scATAC-seq data
dbscATAC: a resource of single-cell super-enhancers/enhancers and gene markers derived from scATAC-seq data Open
Motivation scATAC-seq enables high-resolution mapping of cis-regulatory elements. It has been widely applied to uncover cell-type-specific regulatory networks and complement scRNA-seq analysis in numerous studies. However, a large number o…
View article: Impacts of Captive Domestication and Geographical Divergence on the Gut Microbiome of Endangered Forest Musk Deer
Impacts of Captive Domestication and Geographical Divergence on the Gut Microbiome of Endangered Forest Musk Deer Open
Forest musk deer (Moschus berezovskii), one of the world's most endangered ruminants, faces extinction risks, with captive populations additionally threatened by prevalent diseases including digestive and immune disorders. This study …
View article: The Same Source of Microbes has a Divergent Assembly Trajectory Along a Hot Spring Flowing Path
The Same Source of Microbes has a Divergent Assembly Trajectory Along a Hot Spring Flowing Path Open
Hot spring microbial mats represent intricate biofilms that establish self‐sustaining ecosystems, hosting diverse microbial communities which facilitate a range of biochemical processes and contribute to the structural and functional compl…
View article: Research on the Integrated Impact Assessment Model of Extreme Weather in Agro-tourism Based on ARIMA and Entropy Weight Approach
Research on the Integrated Impact Assessment Model of Extreme Weather in Agro-tourism Based on ARIMA and Entropy Weight Approach Open
Agro-tourism has been developing rapidly in China and globally, but agro-tourism development is deeply affected by the frequency of extreme weather in the region and other constraints on tourism development. Based on the above viewpoints, …
View article: Generation mechanism and influencing factors of transient overvoltage on ultra high-voltage direct current transmission
Generation mechanism and influencing factors of transient overvoltage on ultra high-voltage direct current transmission Open
The transient overvoltage caused by faults in ultra-high-voltage direct current (UHVDC) transmission lines and alternating current (AC) systems can adversely affect system safety and stability. This study theoretically analyzes the transie…
View article: Long-read epicPCR enhances species-level host identification of clinically relevant antibiotic resistance genes in environmental microbial communities
Long-read epicPCR enhances species-level host identification of clinically relevant antibiotic resistance genes in environmental microbial communities Open
Identifying clinically relevant antibiotic resistance gene (ARG) hosts in complex microbial communities is crucial for environmental health. EpicPCR (emulsion, paired isolation, and concatenation PCR), a single-cell technology, has advance…
View article: Transformative Aspects of Agricultural Modernization and Its Land Use Requirements: Insights from Chinese Case Studies
Transformative Aspects of Agricultural Modernization and Its Land Use Requirements: Insights from Chinese Case Studies Open
Sustainable agriculture has been proposed by the United Nations as a key indicator of the Sustainable Development Goals (SDGs). It presents diverse features and rich connotations in the transformation towards modernization. However, for a …
View article: Developing a microfluidic‐based epicPCR reveals diverse potential hosts of the <i>mcrA</i> gene in marine cold seep
Developing a microfluidic‐based epicPCR reveals diverse potential hosts of the <i>mcrA</i> gene in marine cold seep Open
Anaerobic methanotrophic (ANME) microbes play a crucial role in the bioprocess of anaerobic oxidation of methane (AOM). However, due to their unculturable status, their diversity is poorly understood. In this study, we established a microf…
View article: Long-term cultivation of grass–legume mixtures changed the assembly process of the microbial community and increased microbial community stability
Long-term cultivation of grass–legume mixtures changed the assembly process of the microbial community and increased microbial community stability Open
Grass–legume mixtures are a common cultivation system on the Qinghai–Tibet Plateau, where the interactions between rhizosphere microorganisms and crops under long-term cultivation are complex and dynamic. Investigating the dynamic changes …
View article: Transport signatures of phase fluctuations in superconducting qubits
Transport signatures of phase fluctuations in superconducting qubits Open
Josephson junctions supply the nonlinear inductance element in superconducting qubits. In the widely used transmon configuration, where the junction is shunted by a large capacitor, the low charging energy minimizes the sensitivity of the …
View article: iNAP 2.0: Harnessing metabolic complementarity in microbial network analysis
iNAP 2.0: Harnessing metabolic complementarity in microbial network analysis Open
With the widespread adoption of metagenomic sequencing, new perspectives have emerged for studying microbial ecological networks, yielding metabolic evidence of interspecies interactions that traditional co‐occurrence networks cannot infer…
View article: Metabolic interdependencies in thermophilic communities are revealed using co-occurrence and complementarity networks
Metabolic interdependencies in thermophilic communities are revealed using co-occurrence and complementarity networks Open
Microbial communities exhibit intricate interactions underpinned by metabolic dependencies. To elucidate these dependencies, we present a workflow utilizing random matrix theory on metagenome-assembled genomes to construct co-occurrence an…
View article: A DFB-SOA Based Optical Vector Network Analyzer for Characterization of Bandpass Optical Devices
A DFB-SOA Based Optical Vector Network Analyzer for Characterization of Bandpass Optical Devices Open
In this paper a novel optical vector network analyzer (OVNA) utilizing a distributed feedback semiconductor optical amplifier (DFB-SOA) is introduced. The proposed OVNA is implemented by converting the transmission response of the optical …
View article: Molecular Cloning and Functional Identification of a Pericarp- and Testa-Abundant Gene’s (AhN8DT-2) Promoter from Arachis hypogaea
Molecular Cloning and Functional Identification of a Pericarp- and Testa-Abundant Gene’s (AhN8DT-2) Promoter from Arachis hypogaea Open
Cultivated peanut (Arachis hypogaea L.) is a key oil- and protein-providing legume crop of the world. It is full of nutrients, and its nutrient profile is comparable to that of other nuts. Peanut is a unique plant as it showcases a pegging…
View article: Beyond water and soil: Air emerges as a major reservoir of human pathogens
Beyond water and soil: Air emerges as a major reservoir of human pathogens Open
Assessing the risk of human pathogens in the environment is crucial for controlling the spread of diseases and safeguarding human health. However, conducting a thorough assessment of low-abundance pathogens in highly complex environmental …
View article: CoBacFM: Core bacteria forecast model for global grassland pH dynamics under future climate warming scenarios
CoBacFM: Core bacteria forecast model for global grassland pH dynamics under future climate warming scenarios Open
Soil microbes regulate various biogeochemical cycles on Earth and respond rapidly to climate change, which is accompanied by changes in soil pH. However, the long-term patterns of these changes under future climate scenarios remain unclear…
View article: Performance analysis of ground source heat pump systems for constant temperature and humidity air conditioning in industrial buildings: a case study
Performance analysis of ground source heat pump systems for constant temperature and humidity air conditioning in industrial buildings: a case study Open
The ground source heat pump (GSHP) system has gained widespread popularity for its provision of efficient and environmentally sustainable cooling and heating solutions for buildings. While the performance of GSHP systems has raised signifi…
View article: Plasma triglyceride is associated with the recurrence of atrial fibrillation after radiofrequency catheter ablation: A retrospective study
Plasma triglyceride is associated with the recurrence of atrial fibrillation after radiofrequency catheter ablation: A retrospective study Open
Background The purpose of this study was to explore the association between triglycerides (TGs) and the risk of atrial fibrillation (AF) recurrence. Methods and Results Included were adult patients with AF who underwent radiofrequency cath…
View article: The Microbiome Protocols eBook initiative: Building a bridge to microbiome research
The Microbiome Protocols eBook initiative: Building a bridge to microbiome research Open
The Microbiome Protocols eBook (MPB) serves as a crucial bridge, filling gaps in microbiome protocols for both wet experiments and data analysis. The first edition, launched in 2020, featured 152 meticulously curated protocols, garnering w…