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View article: A Genome-Based Pipeline for Digital Siderophore Typing in <i>Pseudomonas</i> Iron-Interaction Network
A Genome-Based Pipeline for Digital Siderophore Typing in <i>Pseudomonas</i> Iron-Interaction Network Open
Siderophores are key mediators of microbial interactions, especially in iron-limited environments. While traditional experimental methods for siderophore typing are time-consuming and low-throughput, we present a genome-based pipeline for …
View article: Siderophore synthetase-receptor gene coevolution reveals habitat- and pathogen-specific bacterial iron interaction networks
Siderophore synthetase-receptor gene coevolution reveals habitat- and pathogen-specific bacterial iron interaction networks Open
Bacterial social interactions play crucial roles in various ecological, medical, and biotechnological contexts. However, predicting these interactions from genome sequences is notoriously difficult. Here, we developed bioinformatic tools t…
View article: Forging the iron‐net: Towards a quantitative understanding of microbial communities via siderophore‐mediated interactions
Forging the iron‐net: Towards a quantitative understanding of microbial communities via siderophore‐mediated interactions Open
Iron is a critical yet limited nutrient for microbial growth. To scavenge iron, most microbes produce siderophores—diverse small molecules with high iron affinities. Different siderophores are specifically recognized and uptaken by corresp…
View article: Forging the Iron-Net: Towards a Quantitative Understanding of Microbial Communities via Siderophore-Mediated Interactions
Forging the Iron-Net: Towards a Quantitative Understanding of Microbial Communities via Siderophore-Mediated Interactions Open
Iron is a critical yet limited nutrient for microbial growth. To scavenge iron, most microbes produce siderophores—diverse small molecules with high iron affinities. Different siderophores are specifically recognized and uptaken by c…
View article: Siderophore synthetase-receptor gene coevolution reveals habitat- and pathogen-specific bacterial iron interaction networks
Siderophore synthetase-receptor gene coevolution reveals habitat- and pathogen-specific bacterial iron interaction networks Open
Predicting bacterial social interactions from genome sequences is notoriously difficult. Here, we developed bioinformatic tools to predict whether secreted iron-scavenging siderophores stimulate or inhibit the growth of community members. …