Zhixiong Zhou
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View article: Evolutionary balance between genomic conservation and coral reef adaptation in the yellow boxfish (<i>Ostracion cubicus</i>)
Evolutionary balance between genomic conservation and coral reef adaptation in the yellow boxfish (<i>Ostracion cubicus</i>) Open
The yellow boxfish ( Ostracion cubicus) exhibits a combination of derived morphological traits specialized for coral reef environments and ancestral characteristics, including a fused dermal plate. Contradictory evolutionary evidenc…
View article: Analysis of population structure and selection signatures for artificial domestication of Rock Bream (Oplegnathus fasciatus) in coastal China
Analysis of population structure and selection signatures for artificial domestication of Rock Bream (Oplegnathus fasciatus) in coastal China Open
Studying domestication is crucial to understanding the genetic diversity and adaptive evolution of species. Thus, the purpose of this study is to screen the selection signatures on the whole genome of rock bream (Oplegnathus fasciatus) in …
View article: Chromosome-level assembly and gene annotation of Decapterus maruadsi genome using Nanopore and Hi-C technologies
Chromosome-level assembly and gene annotation of Decapterus maruadsi genome using Nanopore and Hi-C technologies Open
Decapterus maruadsi is one of the representative offshore fish in the Western Pacific. Since the last century, it has become a commercially valuable marine fishery species in the Western Pacific region. Despite its high economic value, the…
View article: Evolutionary divergence of subgenomes in common carp provides insights into speciation and allopolyploid success
Evolutionary divergence of subgenomes in common carp provides insights into speciation and allopolyploid success Open
Hybridization and polyploidization have made great contributions to speciation, heterosis, and agricultural production within plants, but there is still limited understanding and utilization in animals. Subgenome structure and expression r…
View article: The Adaptive Evolution of <i>Leuciscus waleckii</i> in Lake Dali Nur and Convergent Evolution of Cypriniformes Fishes Inhabiting Extremely Alkaline Environments
The Adaptive Evolution of <i>Leuciscus waleckii</i> in Lake Dali Nur and Convergent Evolution of Cypriniformes Fishes Inhabiting Extremely Alkaline Environments Open
Leuciscus waleckii is widely distributed in Northeast Asia and has high economic value. The population in Lake Dali Nur can adapt to extremely alkaline–saline water with bicarbonate over 50 mmol/L (pH 9.6), thus providing an exceptional mo…
View article: Genome‐wide evolutionary signatures of climate adaptation in spotted sea bass inhabiting different latitudinal regions
Genome‐wide evolutionary signatures of climate adaptation in spotted sea bass inhabiting different latitudinal regions Open
Consideration of the thermal adaptation of species is essential in both evolutionary biology and climate‐change biology because it frequently leads to latitudinal gradients of various phenotypes among populations. The spotted sea bass ( La…
View article: Population structure and genome-wide evolutionary signatures reveal putative climate-driven habitat change and local adaptation in the large yellow croaker
Population structure and genome-wide evolutionary signatures reveal putative climate-driven habitat change and local adaptation in the large yellow croaker Open
The large yellow croaker ( Larimichthys crocea ) is one of the most economically valuable marine fish in China and is a notable species in ecological studies owing to a serious collapse of wild germplasm in the past few decades. The stock …
View article: Chromosome-level haplotype-resolved genome assembly for Takifugu ocellatus using PacBio and Hi-C technologies
Chromosome-level haplotype-resolved genome assembly for Takifugu ocellatus using PacBio and Hi-C technologies Open
Takifugu species serve as a model system for evolutionary studies due to their compact genomes and diverse phenotypes. The ocellated puffer ( Takifugu ocellatus ), characterized by special colouration, is a scarce anadromous species in the…
View article: Evaluating the Effects of Cu2+ on the Development and Reproduction of <i>Spodoptera litura</i> (Lepidoptera: Noctuidae) Based on the Age-Stage, Two-Sex Life Table
Evaluating the Effects of Cu2+ on the Development and Reproduction of <i>Spodoptera litura</i> (Lepidoptera: Noctuidae) Based on the Age-Stage, Two-Sex Life Table Open
Copper (Cu2+) is a micronutrient that promotes the development and reproduction of organisms. However, with the rapid expansion of modern industry and agriculture, Cu2+ concentrations are increasing, which might have negative impacts on bi…
View article: Transcriptome Analysis Reveals Molecular Underpinnings of Common Carp (Cyprinus carpio) Under Hypoxia Stress
Transcriptome Analysis Reveals Molecular Underpinnings of Common Carp (Cyprinus carpio) Under Hypoxia Stress Open
As an essential environmental factor that affects the economic benefits of aquaculture, hypoxia is one of the urgent problems to be solved in the aquaculture fish breeding industry. Common carp ( Cyprinus carpio ) is a critical economic fi…
View article: Genomic insights into the adaptive and convergent evolution of <i>Leuciscus waleckii</i> inhabiting extremely alkaline environments
Genomic insights into the adaptive and convergent evolution of <i>Leuciscus waleckii</i> inhabiting extremely alkaline environments Open
Leuciscus waleckii is widely distributed in Northeast Asia and has high economic value. Different from its freshwater counterparts, the population in Lake Dali Nur has a strong alkalinity tolerance and can adapt to extremely alkaline–salin…
View article: The Draft Genome of Cryptocaryon irritans Provides Preliminary Insights on the Phylogeny of Ciliates
The Draft Genome of Cryptocaryon irritans Provides Preliminary Insights on the Phylogeny of Ciliates Open
DATA REPORT article Front. Genet., 12 January 2022Sec. Livestock Genomics Volume 12 - 2021 | https://doi.org/10.3389/fgene.2021.808366
View article: Chromosome-Level Assembly of the Southern Rock Bream (Oplegnathus fasciatus) Genome Using PacBio and Hi-C Technologies
Chromosome-Level Assembly of the Southern Rock Bream (Oplegnathus fasciatus) Genome Using PacBio and Hi-C Technologies Open
The Rock Bream ( Oplegnathus fasciatus ) is an economically important rocky reef fish of the Northwest Pacific Ocean. In recent years, it has been cultivated as an important edible fish in coastal areas of China. Despite its economic impor…
View article: The VirB System Plays a Crucial Role in Brucella Intracellular Infection
The VirB System Plays a Crucial Role in Brucella Intracellular Infection Open
Brucellosis is a highly prevalent zoonotic disease caused by Brucella. Brucella spp. are gram-negative facultative intracellular parasitic bacteria. Its intracellular survival and replication depend on a functional virB system, an operon e…
View article: The Influence of Gut Microbiota on the Fecundity of <i>Henosepilachna vigintioctopunctata</i> (Coleoptera: Coccinellidae)
The Influence of Gut Microbiota on the Fecundity of <i>Henosepilachna vigintioctopunctata</i> (Coleoptera: Coccinellidae) Open
The gut microbiota of insects usually plays an important role in the development and reproduction of their hosts. The fecundity of Henosepilachna vigintioctopunctata (Fabricius) varies greatly when they develop on different host plants. Wh…
View article: Genome-wide association analysis reveals genetic variations and candidate genes associated with growth-related traits and condition factor in Takifugu bimaculatus
Genome-wide association analysis reveals genetic variations and candidate genes associated with growth-related traits and condition factor in Takifugu bimaculatus Open
Takifugu bimaculatus is a new breed of pufferfish that has emerged in the recent twenty years. As a euryhaline species, the habitat of T. bimaculatus ranges from the Yangtze River estuary to the South China Sea. It is always mix-bred with …
View article: Deep Insight Into Long Non-coding RNA and mRNA Transcriptome Profiling in HepG2 Cells Expressing Genotype IV Swine Hepatitis E Virus ORF3
Deep Insight Into Long Non-coding RNA and mRNA Transcriptome Profiling in HepG2 Cells Expressing Genotype IV Swine Hepatitis E Virus ORF3 Open
Swine hepatitis E (swine HE) is a new type of zoonotic infectious disease caused by the swine hepatitis E virus (swine HEV). Open reading frame 3 (ORF3) is an important virulent protein of swine HEV, but its function still is mainly unclea…
View article: The Mechanism of Facultative Intracellular Parasitism of Brucella
The Mechanism of Facultative Intracellular Parasitism of Brucella Open
Brucellosis is a highly prevalent zoonotic disease characterized by abortion and reproductive dysfunction in pregnant animals. Although the mortality rate of Brucellosis is low, it is harmful to human health, and also seriously affects the…
View article: First genomic prediction and genome‐wide association for complex growth‐related traits in Rock Bream (<i>Oplegnathus fasciatus</i>)
First genomic prediction and genome‐wide association for complex growth‐related traits in Rock Bream (<i>Oplegnathus fasciatus</i>) Open
Rock Bream ( Oplegnathus fasciatus ) is an important aquaculture species for offshore cage aquaculture and fish stocking of marine ranching in East Asia. Genomic selection has the potential to expedite genetic gain for the key target trait…
View article: Genome-wide evolutionary signatures of climate adaptation in spotted sea bass inhabiting different latitudinal regions
Genome-wide evolutionary signatures of climate adaptation in spotted sea bass inhabiting different latitudinal regions Open
Temperature is an important climatic factor that shapes the distribution of eurythermal species. Thermal adaptation of species is important to both evolutionary biology and climate-change biology because it frequently leads to latitudinal …
View article: Genome-Scale Phylogenetic and Population Genetic Studies Provide Insight Into Introgression and Adaptive Evolution of Takifugu Species in East Asia
Genome-Scale Phylogenetic and Population Genetic Studies Provide Insight Into Introgression and Adaptive Evolution of Takifugu Species in East Asia Open
As a typical marine adaptive radiation species, most Takifugu species are widely distributed in East Asian offshore, which have diversified morphological characteristics and different ecological habits. The phylogenetic relationship and po…
View article: Genetic analysis of whole mitochondrial genome of Lateolabrax maculatus (Perciformes: Moronidae) indicates the presence of two populations along the Chinese coast
Genetic analysis of whole mitochondrial genome of Lateolabrax maculatus (Perciformes: Moronidae) indicates the presence of two populations along the Chinese coast Open
The whole mitochondrial genome of Lateolabrax maculatus (Cuvier, 1828) was used to investigate the reasons for the observed patterns of genetic differentiation among 12 populations in northern and southern China. The haplotype diversity an…
View article: Draft genome of the Chinese seabass (Lateolabrax maculatus)
Draft genome of the Chinese seabass (Lateolabrax maculatus) Open
Refined chromosome-level genome assembly of spotted sea bass (Lateolabrax maculatus). previous reference genome assembly was completed with high accuracy and contiguity at the scaffold level (GenBank accession: GCA_004028665.1). How…
View article: Identifying Circular RNAs in HepG2 Expressing Genotype IV Swine Hepatitis E Virus ORF3 Via Whole Genome Sequencing
Identifying Circular RNAs in HepG2 Expressing Genotype IV Swine Hepatitis E Virus ORF3 Via Whole Genome Sequencing Open
Swine hepatitis E (SHE) is a new type of zoonotic infectious disease caused by swine hepatitis E virus (SHEV). Open reading frame 3 (ORF3) is a key regulatory and virulent protein of SHEV. Circular RNAs (circRNAs) are a special kind of non…
View article: Chromosome-level genome of Poropuntius huangchuchieni provides a diploid progenitor-like reference genome for the allotetraploid Cyprinus carpio
Chromosome-level genome of Poropuntius huangchuchieni provides a diploid progenitor-like reference genome for the allotetraploid Cyprinus carpio Open
The diploid Poropuntius huangchuchieni in the cyprinid family, which is widely distributed in the Mekong and Red River basins, is one of the most closely related diploid progenitor-like species of allotetraploid common carp, which was gene…
View article: Development and Evaluation of a High-Throughput Single-Nucleotide Polymorphism Array for Large Yellow Croaker (Larimichthys crocea)
Development and Evaluation of a High-Throughput Single-Nucleotide Polymorphism Array for Large Yellow Croaker (Larimichthys crocea) Open
High-density single-nucleotide polymorphism (SNP) genotyping array is an essential tool for genetic analyses of animals and plants. Large yellow croaker (Larimichthys crocea) is one of the most commercially important marine fish spe…
View article: Deep Insight&nbsp;Into Long Non-Coding RNA and mRNA Transcriptome Profiling in HepG2 Cells Expressing Genotype IV Swine Hepatitis E Virus ORF3
Deep Insight Into Long Non-Coding RNA and mRNA Transcriptome Profiling in HepG2 Cells Expressing Genotype IV Swine Hepatitis E Virus ORF3 Open
Background: Swine hepatitis E (SHE) is a new type of zoonotic infectious disease caused by swine hepatitis E virus (SHEV). Open reading frame 3 (ORF3) is an important virulent protein of SHEV but its function still is mainly unclear.Method…
View article: Chromosome-level genome of<i>Poropuntius huangchuchieni</i>provides a diploid progenitor-like reference genome for the allotetraploid<i>Cyprinus carpio</i>
Chromosome-level genome of<i>Poropuntius huangchuchieni</i>provides a diploid progenitor-like reference genome for the allotetraploid<i>Cyprinus carpio</i> Open
The diploid Poropuntius huangchuchieni in the cyprinid family, which is distributed in the Mekong and Red River basins, is one of the most closely related diploid progenitor-like species of allotetraploid common carp. Therefore, the P. hua…
View article: Immunological pathways of macrophage response to <i>Brucella ovis</i> infection
Immunological pathways of macrophage response to <i>Brucella ovis</i> infection Open
As the molecular mechanisms of Brucella ovis pathogenicity are not completely clear, we have applied a transcriptome approach to identify the differentially expressed genes (DEGs) in RAW264.7 macrophage infected with B. ovis. The DEGs rela…
View article: Genetic analysis of whole mitochondrial genome of Lateolabrax maculatus (Perciformes: Moronidae) indicates the presence of two populations along the Chinese coast
Genetic analysis of whole mitochondrial genome of Lateolabrax maculatus (Perciformes: Moronidae) indicates the presence of two populations along the Chinese coast Open
The whole mitochondrial genome of Lateolabrax maculatus (Cuvier, 1828) was used to investigate the reasons for the observed patterns of genetic differentiation among 12 populations in northern and southern China. The haplotype diversity an…