Zhongfeng Zhou
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View article: Cold-Induced Physiological and Biochemical Alternations and Proteomic Insight into the Response of Saccharum spontaneum to Low Temperature
Cold-Induced Physiological and Biochemical Alternations and Proteomic Insight into the Response of Saccharum spontaneum to Low Temperature Open
Sugarcane, a cash crop, is easily affected by low temperature, which results in a decrease in yield and sugar production. Breeding a new variety with cold tolerance is an essential strategy to reduce loss from cold stress. The identificati…
View article: MicroSugar: A database of comprehensive miRNA target prediction framework for sugarcane (Saccharum officinarum L.)
MicroSugar: A database of comprehensive miRNA target prediction framework for sugarcane (Saccharum officinarum L.) Open
microRNA (miRNA) is a group of small non-coding RNA that plays important role in post-transcription of gene expression. With the studies about miRNA increase in sugarcane, the researchers lack an exhaustive resource to achieve the data. To…
View article: Transcriptome and metabolome analyses reveal new insights into chlorophyll, photosynthesis, metal ion and phenylpropanoids related pathways during sugarcane ratoon chlorosis
Transcriptome and metabolome analyses reveal new insights into chlorophyll, photosynthesis, metal ion and phenylpropanoids related pathways during sugarcane ratoon chlorosis Open
Background Ratoon sugarcane is susceptible to chlorosis, characterized by chlorophyll loss, poor growth, and a multitude of nutritional deficiency mainly occurring at young stage. Chlorosis would significantly reduce the cane production. T…
View article: Additional file 6 of Transcriptome and metabolome analyses reveal new insights into chlorophyll, photosynthesis, metal ion and phenylpropanoids related pathways during sugarcane ratoon chlorosis
Additional file 6 of Transcriptome and metabolome analyses reveal new insights into chlorophyll, photosynthesis, metal ion and phenylpropanoids related pathways during sugarcane ratoon chlorosis Open
Additional file 6: Table S6. The differential expression genes of Photosynthesis and Photosynthesis - antenna proteins pathways.
View article: Additional file 8 of Transcriptome and metabolome analyses reveal new insights into chlorophyll, photosynthesis, metal ion and phenylpropanoids related pathways during sugarcane ratoon chlorosis
Additional file 8 of Transcriptome and metabolome analyses reveal new insights into chlorophyll, photosynthesis, metal ion and phenylpropanoids related pathways during sugarcane ratoon chlorosis Open
Additional file 8: Table S8. The 598 metabolites identified in metabolome. The table included the quantification value, mass spectrum character, and compound identification information of each metabolites.
View article: Additional file 7 of Transcriptome and metabolome analyses reveal new insights into chlorophyll, photosynthesis, metal ion and phenylpropanoids related pathways during sugarcane ratoon chlorosis
Additional file 7 of Transcriptome and metabolome analyses reveal new insights into chlorophyll, photosynthesis, metal ion and phenylpropanoids related pathways during sugarcane ratoon chlorosis Open
Additional file 7: Table S7. The differential expression genes related to metal ion homeostasis and transport process.
View article: Additional file 1 of Transcriptome and metabolome analyses reveal new insights into chlorophyll, photosynthesis, metal ion and phenylpropanoids related pathways during sugarcane ratoon chlorosis
Additional file 1 of Transcriptome and metabolome analyses reveal new insights into chlorophyll, photosynthesis, metal ion and phenylpropanoids related pathways during sugarcane ratoon chlorosis Open
Additional file 1: Table S1. The primers for validation of transcriptome. The table included the twenty genes that selected for validation of transcriptome. The parameter of each primer, which included primer sequence, melting temperature,…
View article: Additional file 2 of Transcriptome and metabolome analyses reveal new insights into chlorophyll, photosynthesis, metal ion and phenylpropanoids related pathways during sugarcane ratoon chlorosis
Additional file 2 of Transcriptome and metabolome analyses reveal new insights into chlorophyll, photosynthesis, metal ion and phenylpropanoids related pathways during sugarcane ratoon chlorosis Open
Additional file 2: Table S2. The expression and annotation of all the differential expression unigenes. This table included 11,776 unigenes. The read count, FPKM value, foldchange, KEGG and GO annotation were indicated.
View article: Additional file 4 of Transcriptome and metabolome analyses reveal new insights into chlorophyll, photosynthesis, metal ion and phenylpropanoids related pathways during sugarcane ratoon chlorosis
Additional file 4 of Transcriptome and metabolome analyses reveal new insights into chlorophyll, photosynthesis, metal ion and phenylpropanoids related pathways during sugarcane ratoon chlorosis Open
Additional file 4: Table S4. The KEGG pathway enrichment analysis results of the differential expression unigenes.
View article: Additional file 9 of Transcriptome and metabolome analyses reveal new insights into chlorophyll, photosynthesis, metal ion and phenylpropanoids related pathways during sugarcane ratoon chlorosis
Additional file 9 of Transcriptome and metabolome analyses reveal new insights into chlorophyll, photosynthesis, metal ion and phenylpropanoids related pathways during sugarcane ratoon chlorosis Open
Additional file 9: Table S9. The differential expression genes of Phenylpropanoid biosynthesis pathways.
View article: Additional file 3 of Transcriptome and metabolome analyses reveal new insights into chlorophyll, photosynthesis, metal ion and phenylpropanoids related pathways during sugarcane ratoon chlorosis
Additional file 3 of Transcriptome and metabolome analyses reveal new insights into chlorophyll, photosynthesis, metal ion and phenylpropanoids related pathways during sugarcane ratoon chlorosis Open
Additional file 3: Table S3. The GO enrichment analysis results of the differential expression unigenes.
View article: Additional file 5 of Transcriptome and metabolome analyses reveal new insights into chlorophyll, photosynthesis, metal ion and phenylpropanoids related pathways during sugarcane ratoon chlorosis
Additional file 5 of Transcriptome and metabolome analyses reveal new insights into chlorophyll, photosynthesis, metal ion and phenylpropanoids related pathways during sugarcane ratoon chlorosis Open
Additional file 5: Table S5. The differential expression genes of Porphyrin and chlorophyll metabolism pathway.
View article: Transcriptome and Metabolome Analyses Reveal an Insight of Chlorophyll, Photosynthesis, Metal Ion and Phenylpropanoids Related Pathways in Sugarcane Ratoon Chlorosis
Transcriptome and Metabolome Analyses Reveal an Insight of Chlorophyll, Photosynthesis, Metal Ion and Phenylpropanoids Related Pathways in Sugarcane Ratoon Chlorosis Open
BackgroundRatoon sugarcane (Saccharum officinarum) is susceptible to chlorosis, significantly reducing production. The molecular mechanism underlying this phenomenon remains unknown. We analyzed the transcriptome and metabolome of chloroti…
View article: Characterization of full-length transcriptome in Saccharum officinarum and molecular insights into tiller development
Characterization of full-length transcriptome in Saccharum officinarum and molecular insights into tiller development Open
View article: Integration of Transcriptional and Post-transcriptional Analysis Revealed the Early Response Mechanism of Sugarcane to Cold Stress
Integration of Transcriptional and Post-transcriptional Analysis Revealed the Early Response Mechanism of Sugarcane to Cold Stress Open
Cold stress causes major losses to sugarcane production, yet the precise molecular mechanisms that cause losses due to cold stress are not well-understood. To survey miRNAs and genes involved in cold tolerance, RNA-seq, miRNA-seq, and inte…
View article: Global transcriptome changes of elongating internode of sugarcane in response to mepiquat chloride
Global transcriptome changes of elongating internode of sugarcane in response to mepiquat chloride Open
View article: Additional file 4 of Global transcriptome changes of elongating internode of sugarcane in response to mepiquat chloride
Additional file 4 of Global transcriptome changes of elongating internode of sugarcane in response to mepiquat chloride Open
Additional file 4. GO enrichment analysis of DEGs.
View article: Additional file 6 of Global transcriptome changes of elongating internode of sugarcane in response to mepiquat chloride
Additional file 6 of Global transcriptome changes of elongating internode of sugarcane in response to mepiquat chloride Open
Additional file 6. Correlations between modules and the groups. (CSV 4 kb)
View article: Additional file 1 of Characterization of full-length transcriptome in Saccharum officinarum and molecular insights into tiller development
Additional file 1 of Characterization of full-length transcriptome in Saccharum officinarum and molecular insights into tiller development Open
Additional file 1: Table S1. Alternative splicing events and isoforms identified in S. officinarum full-length transcriptome based on leaf sample library. Table S2. Alternative splicing events and isoforms identified in S. officinarum full…
View article: Additional file 5 of Global transcriptome changes of elongating internode of sugarcane in response to mepiquat chloride
Additional file 5 of Global transcriptome changes of elongating internode of sugarcane in response to mepiquat chloride Open
Additional file 5. KEGG enrichment analysis of DEGs.
View article: Additional file 7 of Global transcriptome changes of elongating internode of sugarcane in response to mepiquat chloride
Additional file 7 of Global transcriptome changes of elongating internode of sugarcane in response to mepiquat chloride Open
Additional file 7. Gene networks of the three hub genes including Stf0 sulfotransferase, cyclin-like F-box, and HOX12. (CSV 2 kb)
View article: Additional file 3 of Global transcriptome changes of elongating internode of sugarcane in response to mepiquat chloride
Additional file 3 of Global transcriptome changes of elongating internode of sugarcane in response to mepiquat chloride Open
Additional file 3. Annotation results of isoforms from full-length transcriptome of sugarcane.
View article: Additional file 2 of Global transcriptome changes of elongating internode of sugarcane in response to mepiquat chloride
Additional file 2 of Global transcriptome changes of elongating internode of sugarcane in response to mepiquat chloride Open
Additional file 2. Summary of full-length transcriptome of sugarcane.
View article: Additional file 1 of Global transcriptome changes of elongating internode of sugarcane in response to mepiquat chloride
Additional file 1 of Global transcriptome changes of elongating internode of sugarcane in response to mepiquat chloride Open
Additional file 1. The primers used in this study.
View article: Global transcriptome changes of elongating internode of sugarcane in response to mepiquat chloride
Global transcriptome changes of elongating internode of sugarcane in response to mepiquat chloride Open
Background: Mepiquat chloride (DPC) is an extensively used chemical to control internode growth and compact canopies in cultured plants. Previous studies suggested that DPC could inhibit gibberellin biosynthesis in sugarcane. Unfortunately…
View article: Enhanced Activity of Genes Associated With Photosynthesis, Phytohormone Metabolism and Cell Wall Synthesis Is Involved in Gibberellin-Mediated Sugarcane Internode Growth
Enhanced Activity of Genes Associated With Photosynthesis, Phytohormone Metabolism and Cell Wall Synthesis Is Involved in Gibberellin-Mediated Sugarcane Internode Growth Open
Internode elongation is an important trait in sugarcane as it affects the sugarcane yield. Gibberellin (GA) is a key modulator of internode elongation in sugarcane. Understanding the gene expression features of GA-mediated internode elonga…
View article: Global Transcriptome Changes of Elongating Internode of Sugarcane in Response to Mepiquat Chloride
Global Transcriptome Changes of Elongating Internode of Sugarcane in Response to Mepiquat Chloride Open
Background: Mepiquat chloride (DPC) is an extensively used chemical to control internode growth and compact canopies in cultured plants. Previous studies suggested that DPC could inhibit gibberellin biosynthesis in sugarcane. Unfortunately…
View article: Genome-Wide Analysis of the DREB Subfamily in Saccharum spontaneum Reveals Their Functional Divergence During Cold and Drought Stresses
Genome-Wide Analysis of the DREB Subfamily in Saccharum spontaneum Reveals Their Functional Divergence During Cold and Drought Stresses Open
Drought and cold stresses are the main environmental factors that affect the yield of sugarcane, and DREB genes play very important roles in tolerance to drought, cold, and other environmental stresses. In this study, bioinformatics…