Repertoire
View article: Sedentary Revolution, Monumental Agency: Reassessing Social Complexity in the Proto-Urban Levant and Anatolia
Sedentary Revolution, Monumental Agency: Reassessing Social Complexity in the Proto-Urban Levant and Anatolia Open
This paper examines the intertwined processes of sedentism, monumental construction, and the emergence of social complexity in the Proto-Urban Levant and Anatolia during the Neolithic and Chalcolithic periods. Traditional models often posi…
View article: Sedentary Revolution, Monumental Agency: Reassessing Social Complexity in the Proto-Urban Levant and Anatolia
Sedentary Revolution, Monumental Agency: Reassessing Social Complexity in the Proto-Urban Levant and Anatolia Open
This paper examines the intertwined processes of sedentism, monumental construction, and the emergence of social complexity in the Proto-Urban Levant and Anatolia during the Neolithic and Chalcolithic periods. Traditional models often posi…
View article: Dupilumab Uniquely Remodels the B-Cell Repertoire in Atopic Dermatitis
Dupilumab Uniquely Remodels the B-Cell Repertoire in Atopic Dermatitis Open
This repository contains the analysis scripts used in the study "Dupilumab Uniquely Remodels the B-Cell Repertoire in Atopic Dermatitis", presented at the 50th Annual Meeting of the Japanese Society for Investigative Dermatology (JSID 2025…
View article: Robust detection of SARS-CoV-2 exposure in population using T-cell repertoire profiling
Robust detection of SARS-CoV-2 exposure in population using T-cell repertoire profiling Open
The dataset contains processed T-cell receptor repertoire sequencing data from >1200 individuals of different sex and age. Note that only samples with good sequencing coverage are published (>10^5 reads per file). The main aim of our study…
View article: Longitudinal HCI as Biometric: A Framework for Identifying Human Users Through Interaction-Based Cognitive Signatures
Longitudinal HCI as Biometric: A Framework for Identifying Human Users Through Interaction-Based Cognitive Signatures Open
As large language models increasingly mediate clinical, educational, and enterprise workflows, a new category of human identity is emerging: the interaction-based biometric. Traditional biometrics rely on physical or physiological traits, …
View article: Longitudinal HCI as Biometric: A Framework for Identifying Human Users Through Interaction-Based Cognitive Signatures
Longitudinal HCI as Biometric: A Framework for Identifying Human Users Through Interaction-Based Cognitive Signatures Open
As large language models increasingly mediate clinical, educational, and enterprise workflows, a new category of human identity is emerging: the interaction-based biometric. Traditional biometrics rely on physical or physiological traits, …
View article: Robust detection of SARS-CoV-2 exposure in population using T-cell repertoire profiling
Robust detection of SARS-CoV-2 exposure in population using T-cell repertoire profiling Open
The dataset contains processed T-cell receptor repertoire sequencing data from >1200 individuals of different sex and age. Note that only samples with good sequencing coverage are published (>10^5 reads per file). The main aim of our study…
View article: Robust detection of SARS-CoV-2 exposure in population using T-cell repertoire profiling
Robust detection of SARS-CoV-2 exposure in population using T-cell repertoire profiling Open
The dataset contains processed T-cell receptor repertoire sequencing data from >1200 individuals of different sex and age. Note that only samples with good sequencing coverage are published (>10^5 reads per file). The main aim of our study…
View article: Dupilumab Uniquely Remodels the B-Cell Repertoire in Atopic Dermatitis
Dupilumab Uniquely Remodels the B-Cell Repertoire in Atopic Dermatitis Open
This repository contains the analysis scripts used in the study "Dupilumab Uniquely Remodels the B-Cell Repertoire in Atopic Dermatitis", presented at the 50th Annual Meeting of the Japanese Society for Investigative Dermatology (JSID 2025…
View article: Remapping Modernism: Polycentric Aesthetics and the Geographies of Literary Innovation
Remapping Modernism: Polycentric Aesthetics and the Geographies of Literary Innovation Open
This paper challenges the conventional, Eurocentric understanding of Modernism by proposing a polycentric framework that acknowledges and explores its diverse geographical manifestations and aesthetic innovations across the globe. Traditio…
View article: The Natufian Catalysis: Rethinking Göbekli Tepe's Emergence and Pre-Agricultural Sacred Space
The Natufian Catalysis: Rethinking Göbekli Tepe's Emergence and Pre-Agricultural Sacred Space Open
Göbekli Tepe stands as an unparalleled archaeological enigma, a monumental complex of pre-agricultural megalithic structures in Upper Mesopotamia dating back to the Pre-Pottery Neolithic A (PPNA). Its discovery profoundly challenged the lo…
View article: Drinking tools in the Waibira chimpanzee community of Budongo forest, Uganda
Drinking tools in the Waibira chimpanzee community of Budongo forest, Uganda Open
Chimpanzees are proficient tool-users, with community-specific tool repertoires. Their tools are made of various materials, such as sticks, stones, and leaves, and are used for extracting food, drinking water, and personal hygiene purposes…
View article: Drinking tools in the Waibira chimpanzee community of Budongo forest, Uganda
Drinking tools in the Waibira chimpanzee community of Budongo forest, Uganda Open
Chimpanzees are proficient tool-users, with community-specific tool repertoires. Their tools are made of various materials, such as sticks, stones, and leaves, and are used for extracting food, drinking water, and personal hygiene purposes…
View article: Remapping Modernism: Polycentric Aesthetics and the Geographies of Literary Innovation
Remapping Modernism: Polycentric Aesthetics and the Geographies of Literary Innovation Open
This paper challenges the conventional, Eurocentric understanding of Modernism by proposing a polycentric framework that acknowledges and explores its diverse geographical manifestations and aesthetic innovations across the globe. Traditio…
View article: Inventing the Italian Subject: Dante, Petrarch, and Boccaccio's Poetics of Contingency
Inventing the Italian Subject: Dante, Petrarch, and Boccaccio's Poetics of Contingency Open
This paper explores how Dante Alighieri, Francesco Petrarch, and Giovanni Boccaccio, through their distinct literary innovations, collectively contributed to the invention of a nascent "Italian Subject" characterized by a profound engageme…
View article: The Natufian Catalysis: Rethinking Göbekli Tepe's Emergence and Pre-Agricultural Sacred Space
The Natufian Catalysis: Rethinking Göbekli Tepe's Emergence and Pre-Agricultural Sacred Space Open
Göbekli Tepe stands as an unparalleled archaeological enigma, a monumental complex of pre-agricultural megalithic structures in Upper Mesopotamia dating back to the Pre-Pottery Neolithic A (PPNA). Its discovery profoundly challenged the lo…
View article: Inventing the Italian Subject: Dante, Petrarch, and Boccaccio's Poetics of Contingency
Inventing the Italian Subject: Dante, Petrarch, and Boccaccio's Poetics of Contingency Open
This paper explores how Dante Alighieri, Francesco Petrarch, and Giovanni Boccaccio, through their distinct literary innovations, collectively contributed to the invention of a nascent "Italian Subject" characterized by a profound engageme…
View article: Experiments in generating Multiple Sequence Alignments (MSAs) for AlphaFold, which include specific co-evolutionary information for peptide:MHC complexes
Experiments in generating Multiple Sequence Alignments (MSAs) for AlphaFold, which include specific co-evolutionary information for peptide:MHC complexes Open
The combinatorial complexity of peptide recognition by T cells of antigenic peptides bound to MHC molecules is sufficient to make predictive methods the only realistic path to generating structural information at a repertoire scale. Since …
View article: Experiments in generating Multiple Sequence Alignments (MSAs) for AlphaFold, which include specific co-evolutionary information for peptide:MHC complexes
Experiments in generating Multiple Sequence Alignments (MSAs) for AlphaFold, which include specific co-evolutionary information for peptide:MHC complexes Open
The combinatorial complexity of peptide recognition by T cells of antigenic peptides bound to MHC molecules is sufficient to make predictive methods the only realistic path to generating structural information at a repertoire scale. Since …
View article: Clara Wieck, Robert Schumann and Johannes Brahms – inseparable partnership and union
Clara Wieck, Robert Schumann and Johannes Brahms – inseparable partnership and union Open
This written commentary is part of a larger portfolio of artistic research that I submitted for my DPerf degree. It includes three artistic projects and one development project. In all four projects, I aimed to highlight and reveal the ext…
View article: Minimally expanded breast cancer tumor-infiltrating-lymphocytes provide guidance for therapeutic selection
Minimally expanded breast cancer tumor-infiltrating-lymphocytes provide guidance for therapeutic selection Open
Introduction The analysis of tumor-infiltrating lymphocytes often requires techniques that expand their numbers, potentially introducing bias. To address this, we performed a detailed analysis of minimally cultured TILs to evaluate whether…
View article: Human interleukin-4-dependent facilitation of human IgG production in PBL-NOG-hIL-4-Tg mice
Human interleukin-4-dependent facilitation of human IgG production in PBL-NOG-hIL-4-Tg mice Open
Immune-humanized mouse models are indispensable tools for evaluating human immune responses and testing immune-based therapies; however, the induction of robust human antigen-specific immunoglobulin G (IgG) production remains limited due t…
View article: Ardipithecus: Challenging Paradigms of Early Hominin Evolution
Ardipithecus: Challenging Paradigms of Early Hominin Evolution Open
The discovery and subsequent analysis of *Ardipithecus ramidus* and *Ardipithecus kadabba* from the Middle Awash of Ethiopia have profoundly reshaped our understanding of early hominin evolution. Prior to these findings, prevailing paradig…
View article: Deep exploration of the TCR CDR3β repertoire specific for viral CD4 T-cell epitopes inside the circulating T-cell repertoire
Deep exploration of the TCR CDR3β repertoire specific for viral CD4 T-cell epitopes inside the circulating T-cell repertoire Open
Introduction This study provides an in-depth analysis of the diversity of the CD4 TCR CDR3β repertoire specific to influenza A (HA) and Epstein-Barr virus (EBNA) epitopes. Methods Epitope-specific CD4 T cells from 13 healthy donors were en…
View article: Ardipithecus: Challenging Paradigms of Early Hominin Evolution
Ardipithecus: Challenging Paradigms of Early Hominin Evolution Open
The discovery and subsequent analysis of *Ardipithecus ramidus* and *Ardipithecus kadabba* from the Middle Awash of Ethiopia have profoundly reshaped our understanding of early hominin evolution. Prior to these findings, prevailing paradig…
View article: Maya Angelou "Caged Bird" Prosodic–Musical-Rhetorical Analysis Dataset (v1.0)
Maya Angelou "Caged Bird" Prosodic–Musical-Rhetorical Analysis Dataset (v1.0) Open
This dataset contains a multi-layered prosodic, phonetic, musicological, and rhetorical analysis of Maya Angelou’s performance of her poem “Caged Bird.” The data were generated using the Rhetoric Analysis Toolkit, which integrates forced p…
View article: Sprachideologien und Sprachentscheidungen von jüdischen Sprecher*innen im heutigen Berlin
Sprachideologien und Sprachentscheidungen von jüdischen Sprecher*innen im heutigen Berlin Open
Jüdische Sprecher*innen im heutigen Berlin verfügen, wie Sprecher*innen anderer zeitgenössischer jüdischer Communities, über ein „distinctively Jewish linguistic repertoire“ (Benor 2008, 1068), das vor allem aus lexikalischen Elementen aus…
View article: Maya Angelou "Caged Bird" Prosodic–Musical-Rhetorical Analysis Dataset (v1.0)
Maya Angelou "Caged Bird" Prosodic–Musical-Rhetorical Analysis Dataset (v1.0) Open
This dataset contains a multi-layered prosodic, phonetic, musicological, and rhetorical analysis of Maya Angelou’s performance of her poem “Caged Bird.” The data were generated using the Rhetoric Analysis Toolkit, which integrates forced p…
View article: Supplementary Figure S1 from Phase II Trial of Pembrolizumab and Anti-CD3 x Anti-HER2 Bispecific Antibody-Armed Activated T Cells in Metastatic Castration-Resistant Prostate Cancer
Supplementary Figure S1 from Phase II Trial of Pembrolizumab and Anti-CD3 x Anti-HER2 Bispecific Antibody-Armed Activated T Cells in Metastatic Castration-Resistant Prostate Cancer Open
A and B. Evaluation of Vβ repertoire. The three distinct patterns were observed for Vβ repertoire in CD3+/IFN-γ+ T cells post IT. Pattern 1) the proportions of Vβ repertoire noticeably higher after IT relative to preIT PBMC (solid black ar…
View article: Wedge-lab/Gel_pan_cancer_signatures: v.0.0
Wedge-lab/Gel_pan_cancer_signatures: v.0.0 Open
Accompaning scripts and data release for publication of manuscript "Comprehensive repertoire of the chromosomal alteration and mutational signatures across 16 cancer types"