Phylogenetic tree
View article: The Spatiotemporal evolutionary dynamics of crickets and their influencing factors (Orthoptera; Ensifera)
The Spatiotemporal evolutionary dynamics of crickets and their influencing factors (Orthoptera; Ensifera) Open
The mechanisms underlying the formation of species diversity have remained a subject of intense debate. In this study, we used Gryllidea (crickets) as a representative lineage and employed a phylogenetic comparative framework based on a ro…
View article: The Spatiotemporal evolutionary dynamics of crickets and their influencing factors (Orthoptera; Ensifera)
The Spatiotemporal evolutionary dynamics of crickets and their influencing factors (Orthoptera; Ensifera) Open
The mechanisms underlying the formation of species diversity have remained a subject of intense debate. In this study, we used Gryllidea (crickets) as a representative lineage and e…
View article: Evolutionary history of Chinese cavefishes highlights how paleogeoclimatic and river capture processes shaped modern biodiversity
Evolutionary history of Chinese cavefishes highlights how paleogeoclimatic and river capture processes shaped modern biodiversity Open
BEAST_alignment.zip: Alignments for phylogenetic analyses of 10 clades investigated. BEAST_settings.zip: Settings for divergence time estimation of 10 clades investigated. BEAST_timetrees.zip: Timetrees for the 10 clades investigated.
View article: Repetitive DNA Dynamics, Phylogenetic Relationships and Divergence Times in Andean Ctenomys (Rodentia: Ctenomyidae).
Repetitive DNA Dynamics, Phylogenetic Relationships and Divergence Times in Andean Ctenomys (Rodentia: Ctenomyidae). Open
The genus Ctenomys comprises a group of rodents with remarkable karyotypic variability linked to the distribution of repetitive sequences and rearrangements. We analyzed the distribution and variation of repetitive DNA in tw…
View article: Repetitive DNA Dynamics, Phylogenetic Relationships and Divergence Times in Andean Ctenomys (Rodentia: Ctenomyidae).
Repetitive DNA Dynamics, Phylogenetic Relationships and Divergence Times in Andean Ctenomys (Rodentia: Ctenomyidae). Open
The genus Ctenomys comprises a group of rodents with remarkable karyotypic variability linked to the distribution of repetitive sequences and rearrangements. We analyzed the distribution and variation of repetitive DNA in two parapatric An…
View article: T2T genome assembly of Micropterus salmoides (female and male)
T2T genome assembly of Micropterus salmoides (female and male) Open
The largemouth bass (Micropterus salmoides, LMB) is a globally significant species in aquaculture and fisheries. Since its introduction to China in 1983, its aquaculture production has surged, reaching 802,486 metric tons in 2…
View article: A new phylogenetic model of the Platonic corpus, pt. 2. Phylogenetic methods in stylometry
A new phylogenetic model of the Platonic corpus, pt. 2. Phylogenetic methods in stylometry Open
Despite the criticism, the standard chronology of Plato’s works continues to hold sway not only over “developmentalists”, but also over various types of “unitarians”. The authority of the standard chronology rests on the confidence that th…
View article: Molecular Detection and Genetic Characterization of Anaplasma phagocytophilum in Canine Blood Samples via Real-Time PCR from Kerman, Iran
Molecular Detection and Genetic Characterization of Anaplasma phagocytophilum in Canine Blood Samples via Real-Time PCR from Kerman, Iran Open
Anaplasmosis is an emerging tick-borne disease caused by obligate intracellular bacteria of the genus Anaplasma, capable of infecting both animals and humans. Due to the increasing stray dog population in Kerman city, Iran, and associated …
View article: Evolutionary divergence and characterization of aquaporins in salt tolerance and fiber development in tetraploid cotton
Evolutionary divergence and characterization of aquaporins in salt tolerance and fiber development in tetraploid cotton Open
Background Aquaporins (AQPs) are integral membrane proteins belonging to the major intrinsic protein (MIP) family, playing a crucial role in water transport, cell elongation, and stress responses. However, their evolutionary dynamics and f…
View article: Complete chloroplast genomes of two closely related diatoms, <i>Nitzschia nienhuisii</i> and <i>Epithemia catenata</i>
Complete chloroplast genomes of two closely related diatoms, <i>Nitzschia nienhuisii</i> and <i>Epithemia catenata</i> Open
View article: The complete chloroplast genome and phylogenetic analysis of <i>Astragalus khasianus</i> Benth. ex Bunge 1868 (Fabaceae)
The complete chloroplast genome and phylogenetic analysis of <i>Astragalus khasianus</i> Benth. ex Bunge 1868 (Fabaceae) Open
View article: 241Whole Genome Sequencing of Qingyuan Partridge Chicken Blood Samples
241Whole Genome Sequencing of Qingyuan Partridge Chicken Blood Samples Open
241Whole Genome Sequencing of Qingyuan Partridge Chicken Blood Samples
View article: 16S sequencing
16S sequencing Open
Microbial diversity is based on the Illumina NovaSeq sequencing platform, using paired end sequencing to construct small fragment libraries for sequencing. By concatenating and filtering Reads, clustering or denoising, and performing speci…
View article: Novel herpesvirus potentially associated with oral lesions in a two-toed sloth (Choloepus didactylus)
Novel herpesvirus potentially associated with oral lesions in a two-toed sloth (Choloepus didactylus) Open
The superorder Xenarthra comprises anteaters, sloths and armadillos, all endemic of the Americas. Despite their distinctive evolutionary history, information regarding viruses affecting this group remains scarce. Herein, we report a gammah…
View article: Phylogenetic affiliation of endophytic actinobacteria associated with red gum tree grown in salinity area and their plant growth promoting properties and suppression of phytopathogens, and genome data mining of selected strains
Phylogenetic affiliation of endophytic actinobacteria associated with red gum tree grown in salinity area and their plant growth promoting properties and suppression of phytopathogens, and genome data mining of selected strains Open
Eucalyptus is an economic plant of Thailand that can tolerate salt and drought stress. This work aims to report on the study of biodiversity among endophytic actinobacteria isolated from Eucalyptus camaldulensis grown in saline soil, as we…
View article: Diversification of diterpene biosynthesis occurred early in octocoral evolution
Diversification of diterpene biosynthesis occurred early in octocoral evolution Open
Octocorals are the major source of marine-derived bioactive terpenoids. However, the vast majority of explored chemistry is known from shallow-water species, leaving deep-sea octocorals largely unexplored. Recent genomic work uncovered ter…
View article: Evolutionary divergence and functional characterization of the lavender metallothionein (LaMT) gene family in heavy metal stress tolerance
Evolutionary divergence and functional characterization of the lavender metallothionein (LaMT) gene family in heavy metal stress tolerance Open
View article: The evolution of darter color and pattern: small, rocky streams and riffles enhance the diversification of bright and conspicuous fishes
The evolution of darter color and pattern: small, rocky streams and riffles enhance the diversification of bright and conspicuous fishes Open
Organismal color and pattern is important to numerous aspects of animal fitness, and may impact species divergence. Whether different environmental conditions may impact rates of color diversification, and the subsequent impacts on lineage…
View article: Ecomorphological Divergence and Convergent Robusticity in *Paranthropus*: A Biomechanical Synthesis
Ecomorphological Divergence and Convergent Robusticity in *Paranthropus*: A Biomechanical Synthesis Open
The genus *Paranthropus*, encompassing species such as *P. aethiopicus*, *P. boisei*, and *P. robustus*, represents a fascinating and enigmatic lineage within early hominin evolution, characterized by remarkable craniodental robusticity. T…
View article: Prevalence, Risk Factors, and Genetic Evolution of Rat Hepatitis E Virus in Small Mammals from Southwestern Yunnan, China
Prevalence, Risk Factors, and Genetic Evolution of Rat Hepatitis E Virus in Small Mammals from Southwestern Yunnan, China Open
Rat hepatitis E virus (rat HEV, Rocahepevirus genotype C1) represents a potential zoonotic threat, but its epidemiological and evolutionary characteristics in small mammals remain poorly understood, especially in regions with complex geogr…
View article: Optimized k-mer search across millions of bacterial genomes on laptops
Optimized k-mer search across millions of bacterial genomes on laptops Open
Comprehensive bacterial collections have reached millions of genomes, opening new opportunities for point-of-care diagnostics and epidemiological surveillance. However, local real-time search over such collections on commodity hardware rem…
View article: Tehuacán Valley: A Genomic Blueprint of Maize Domestication
Tehuacán Valley: A Genomic Blueprint of Maize Domestication Open
The Tehuacán Valley in south-central Mexico stands as an archeological cradle for maize domestication, providing unparalleled insights into one of humanity's most significant agricultural transformations. This paper explores the genomic ev…
View article: Connectivity among leatherback turtle populations in the Indian Ocean and West Pacific: a new management unit proposed in Sumatra, Indonesia
Connectivity among leatherback turtle populations in the Indian Ocean and West Pacific: a new management unit proposed in Sumatra, Indonesia Open
Leatherback turtles ( Dermochelys coriacea ) are highly migratory and globally distributed, yet exhibit low overall genetic diversity. Currently, the species is divided into seven Regional Management Units (RMUs), and significant gaps rema…
View article: Ecomorphological Divergence and Convergent Robusticity in *Paranthropus*: A Biomechanical Synthesis
Ecomorphological Divergence and Convergent Robusticity in *Paranthropus*: A Biomechanical Synthesis Open
The genus *Paranthropus*, encompassing species such as *P. aethiopicus*, *P. boisei*, and *P. robustus*, represents a fascinating and enigmatic lineage within early hominin evolution, characterized by remarkable craniodental robusticity. T…
View article: Molecular insights into seasonal trematode infections in Bithynia Snails: host lineages, parasite diversity, and Opisthorchis viverrini susceptibility in southern Lao PDR
Molecular insights into seasonal trematode infections in Bithynia Snails: host lineages, parasite diversity, and Opisthorchis viverrini susceptibility in southern Lao PDR Open
Background Opisthorchiasis, caused by Opisthorchis viverrini , is a major public health concern in Southeast Asia. Despite control programs, O. viverrini infection persists and contributes to severe liver diseases, including cholangiocarci…
View article: Comparative Genomics and Phylogenetic Analysis of the Complete Mitochondrial Genome of Siphonariidae
Comparative Genomics and Phylogenetic Analysis of the Complete Mitochondrial Genome of Siphonariidae Open
View article: Tehuacán Valley: A Genomic Blueprint of Maize Domestication
Tehuacán Valley: A Genomic Blueprint of Maize Domestication Open
The Tehuacán Valley in south-central Mexico stands as an archeological cradle for maize domestication, providing unparalleled insights into one of humanity's most significant agricultural transformations. This paper explores the genomic ev…
View article: Thecate stem medusozoan polyp from the Upper Ordovician of Quebec. (project) [X31059] Character matrix for Paleocanna tentaculum phylogeny
Thecate stem medusozoan polyp from the Upper Ordovician of Quebec. (project) [X31059] Character matrix for Paleocanna tentaculum phylogeny Open
View article: The Metric Space of Hominin Origins: Quantifying *Sahelanthropus tchadensis* Affinities at 7 Ma
The Metric Space of Hominin Origins: Quantifying *Sahelanthropus tchadensis* Affinities at 7 Ma Open
The earliest phases of hominin evolution, particularly around 7 million years ago (Ma), remain poorly understood due to a sparse and fragmentary fossil record. *Sahelanthropus tchadensis*, dated to approximately 7 Ma from Chad, is a pivota…
View article: Phylogenetic insights derived from six Xanthomonas draft genomes sequences associated with bacterial spot disease in Turkey
Phylogenetic insights derived from six Xanthomonas draft genomes sequences associated with bacterial spot disease in Turkey Open
Xanthomonas spp. are increasingly recognized as a global threat to agriculture, impacting a broad range of economically important crops. We report the whole genome sequences of six Xanthomonas strains isolated from tomato and pepper plants…